Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04850

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04845 and ABZR87_RS04850 are separated by 211 nucleotidesABZR87_RS04850 and ABZR87_RS04855 are separated by 742 nucleotides ABZR87_RS04845: ABZR87_RS04845 - alkaline phosphatase, at 1,016,880 to 1,018,337 _RS04845 ABZR87_RS04850: ABZR87_RS04850 - hypothetical protein, at 1,018,549 to 1,018,833 _RS04850 ABZR87_RS04855: ABZR87_RS04855 - adenosylhomocysteinase, at 1,019,576 to 1,021,000 _RS04855 Position (kb) 1018 1019Strain fitness (log2 ratio) -2 -1 0 1 2at 1017.599 kb on - strand, within ABZR87_RS04845at 1017.802 kb on + strand, within ABZR87_RS04845at 1017.802 kb on + strand, within ABZR87_RS04845at 1017.802 kb on + strand, within ABZR87_RS04845at 1017.802 kb on + strand, within ABZR87_RS04845at 1017.802 kb on + strand, within ABZR87_RS04845at 1017.803 kb on - strand, within ABZR87_RS04845at 1017.806 kb on + strand, within ABZR87_RS04845at 1017.860 kb on - strand, within ABZR87_RS04845at 1017.943 kb on + strand, within ABZR87_RS04845at 1017.943 kb on + strand, within ABZR87_RS04845at 1017.943 kb on + strand, within ABZR87_RS04845at 1017.944 kb on - strand, within ABZR87_RS04845at 1017.944 kb on - strand, within ABZR87_RS04845at 1017.944 kb on - strand, within ABZR87_RS04845at 1017.944 kb on - strand, within ABZR87_RS04845at 1017.944 kb on - strand, within ABZR87_RS04845at 1017.944 kb on - strand, within ABZR87_RS04845at 1017.964 kb on + strand, within ABZR87_RS04845at 1017.965 kb on - strand, within ABZR87_RS04845at 1017.965 kb on - strand, within ABZR87_RS04845at 1017.965 kb on - strand, within ABZR87_RS04845at 1018.024 kb on + strand, within ABZR87_RS04845at 1018.024 kb on + strand, within ABZR87_RS04845at 1018.024 kb on + strand, within ABZR87_RS04845at 1018.024 kb on + strand, within ABZR87_RS04845at 1018.024 kb on + strand, within ABZR87_RS04845at 1018.025 kb on - strand, within ABZR87_RS04845at 1018.138 kb on + strand, within ABZR87_RS04845at 1018.138 kb on + strand, within ABZR87_RS04845at 1018.138 kb on + strand, within ABZR87_RS04845at 1018.138 kb on + strand, within ABZR87_RS04845at 1018.139 kb on - strand, within ABZR87_RS04845at 1018.139 kb on - strand, within ABZR87_RS04845at 1018.139 kb on - strand, within ABZR87_RS04845at 1018.139 kb on - strand, within ABZR87_RS04845at 1018.139 kb on - strand, within ABZR87_RS04845at 1018.139 kb on - strand, within ABZR87_RS04845at 1018.139 kb on - strand, within ABZR87_RS04845at 1018.139 kb on - strand, within ABZR87_RS04845at 1018.139 kb on - strand, within ABZR87_RS04845at 1018.139 kb on - strand, within ABZR87_RS04845at 1018.312 kb on + strandat 1018.313 kb on - strandat 1018.313 kb on - strandat 1018.313 kb on - strandat 1018.313 kb on - strandat 1018.325 kb on + strandat 1018.325 kb on + strandat 1018.325 kb on + strandat 1018.326 kb on - strandat 1018.326 kb on - strandat 1018.412 kb on + strandat 1018.533 kb on + strandat 1018.533 kb on + strandat 1018.533 kb on + strandat 1018.533 kb on + strandat 1018.533 kb on + strandat 1018.533 kb on + strandat 1018.533 kb on + strandat 1018.534 kb on - strandat 1018.534 kb on - strandat 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.641 kb on - strand, within ABZR87_RS04850at 1018.641 kb on - strand, within ABZR87_RS04850at 1018.641 kb on - strand, within ABZR87_RS04850at 1018.641 kb on - strand, within ABZR87_RS04850at 1018.641 kb on - strand, within ABZR87_RS04850at 1018.686 kb on - strand, within ABZR87_RS04850at 1018.703 kb on + strand, within ABZR87_RS04850at 1018.703 kb on + strand, within ABZR87_RS04850at 1018.703 kb on + strand, within ABZR87_RS04850at 1018.703 kb on + strand, within ABZR87_RS04850at 1018.808 kb on + strandat 1018.808 kb on + strandat 1018.809 kb on - strandat 1018.888 kb on + strandat 1018.888 kb on + strandat 1018.888 kb on + strandat 1018.889 kb on - strandat 1018.941 kb on + strandat 1018.941 kb on + strandat 1018.941 kb on + strandat 1018.941 kb on + strandat 1018.941 kb on + strandat 1018.942 kb on - strandat 1018.942 kb on - strandat 1018.942 kb on - strandat 1018.942 kb on - strandat 1018.969 kb on + strandat 1018.969 kb on + strandat 1018.969 kb on + strandat 1019.000 kb on + strandat 1019.011 kb on + strandat 1019.011 kb on + strandat 1019.012 kb on - strandat 1019.012 kb on - strandat 1019.070 kb on - strandat 1019.128 kb on + strandat 1019.128 kb on + strandat 1019.128 kb on + strandat 1019.129 kb on - strandat 1019.144 kb on + strandat 1019.181 kb on + strandat 1019.181 kb on + strandat 1019.181 kb on + strandat 1019.182 kb on - strandat 1019.182 kb on - strandat 1019.182 kb on - strandat 1019.184 kb on - strandat 1019.381 kb on + strandat 1019.465 kb on + strandat 1019.497 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,017,599 - ABZR87_RS04845 0.49 +0.2
1,017,802 + ABZR87_RS04845 0.63 -0.6
1,017,802 + ABZR87_RS04845 0.63 +0.3
1,017,802 + ABZR87_RS04845 0.63 -0.5
1,017,802 + ABZR87_RS04845 0.63 +0.2
1,017,802 + ABZR87_RS04845 0.63 -0.2
1,017,803 - ABZR87_RS04845 0.63 +0.4
1,017,806 + ABZR87_RS04845 0.64 -0.6
1,017,860 - ABZR87_RS04845 0.67 -0.4
1,017,943 + ABZR87_RS04845 0.73 +0.2
1,017,943 + ABZR87_RS04845 0.73 +0.7
1,017,943 + ABZR87_RS04845 0.73 +0.7
1,017,944 - ABZR87_RS04845 0.73 -1.2
1,017,944 - ABZR87_RS04845 0.73 -0.3
1,017,944 - ABZR87_RS04845 0.73 -0.8
1,017,944 - ABZR87_RS04845 0.73 +0.1
1,017,944 - ABZR87_RS04845 0.73 +0.6
1,017,944 - ABZR87_RS04845 0.73 -0.1
1,017,964 + ABZR87_RS04845 0.74 +0.7
1,017,965 - ABZR87_RS04845 0.74 -0.9
1,017,965 - ABZR87_RS04845 0.74 -0.8
1,017,965 - ABZR87_RS04845 0.74 -1.2
1,018,024 + ABZR87_RS04845 0.78 +0.2
1,018,024 + ABZR87_RS04845 0.78 -0.4
1,018,024 + ABZR87_RS04845 0.78 -0.4
1,018,024 + ABZR87_RS04845 0.78 +0.9
1,018,024 + ABZR87_RS04845 0.78 +1.6
1,018,025 - ABZR87_RS04845 0.79 -1.1
1,018,138 + ABZR87_RS04845 0.86 -0.4
1,018,138 + ABZR87_RS04845 0.86 +0.2
1,018,138 + ABZR87_RS04845 0.86 +0.4
1,018,138 + ABZR87_RS04845 0.86 +0.5
1,018,139 - ABZR87_RS04845 0.86 -0.5
1,018,139 - ABZR87_RS04845 0.86 +0.2
1,018,139 - ABZR87_RS04845 0.86 +1.4
1,018,139 - ABZR87_RS04845 0.86 -0.5
1,018,139 - ABZR87_RS04845 0.86 -0.5
1,018,139 - ABZR87_RS04845 0.86 +0.5
1,018,139 - ABZR87_RS04845 0.86 -1.0
1,018,139 - ABZR87_RS04845 0.86 +0.6
1,018,139 - ABZR87_RS04845 0.86 +0.4
1,018,139 - ABZR87_RS04845 0.86 +0.1
1,018,312 + -0.6
1,018,313 - -1.8
1,018,313 - -0.2
1,018,313 - +0.2
1,018,313 - +0.5
1,018,325 + +0.7
1,018,325 + -0.7
1,018,325 + +0.9
1,018,326 - -0.5
1,018,326 - -1.5
1,018,412 + -0.1
1,018,533 + -0.9
1,018,533 + +1.4
1,018,533 + +0.4
1,018,533 + +0.2
1,018,533 + +0.1
1,018,533 + +1.2
1,018,533 + +0.4
1,018,534 - -1.6
1,018,534 - +0.3
1,018,640 + ABZR87_RS04850 0.32 -1.4
1,018,640 + ABZR87_RS04850 0.32 +0.5
1,018,640 + ABZR87_RS04850 0.32 +0.8
1,018,640 + ABZR87_RS04850 0.32 -0.4
1,018,640 + ABZR87_RS04850 0.32 -0.3
1,018,640 + ABZR87_RS04850 0.32 -0.3
1,018,640 + ABZR87_RS04850 0.32 -1.3
1,018,641 - ABZR87_RS04850 0.32 -0.5
1,018,641 - ABZR87_RS04850 0.32 -0.3
1,018,641 - ABZR87_RS04850 0.32 -0.4
1,018,641 - ABZR87_RS04850 0.32 -0.1
1,018,641 - ABZR87_RS04850 0.32 -0.1
1,018,686 - ABZR87_RS04850 0.48 +0.5
1,018,703 + ABZR87_RS04850 0.54 -0.4
1,018,703 + ABZR87_RS04850 0.54 -1.2
1,018,703 + ABZR87_RS04850 0.54 -0.3
1,018,703 + ABZR87_RS04850 0.54 +0.9
1,018,808 + +0.5
1,018,808 + +0.5
1,018,809 - +0.4
1,018,888 + -0.4
1,018,888 + -0.8
1,018,888 + +0.5
1,018,889 - +0.5
1,018,941 + -1.6
1,018,941 + +0.4
1,018,941 + -0.5
1,018,941 + -0.2
1,018,941 + -0.5
1,018,942 - -0.5
1,018,942 - +0.2
1,018,942 - +0.2
1,018,942 - -0.5
1,018,969 + +0.2
1,018,969 + -0.4
1,018,969 + -0.6
1,019,000 + +0.4
1,019,011 + -1.0
1,019,011 + +0.8
1,019,012 - +0.4
1,019,012 - -0.0
1,019,070 - -0.4
1,019,128 + +0.5
1,019,128 + +0.7
1,019,128 + -0.1
1,019,129 - +0.4
1,019,144 + -0.8
1,019,181 + +1.8
1,019,181 + -0.2
1,019,181 + +1.5
1,019,182 - -1.2
1,019,182 - +0.3
1,019,182 - +0.2
1,019,184 - +0.4
1,019,381 + +0.6
1,019,465 + -2.6
1,019,497 + +0.6

Or see this region's nucleotide sequence