Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04120

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04110 and ABZR87_RS04115 are separated by 17 nucleotidesABZR87_RS04115 and ABZR87_RS04120 are separated by 37 nucleotidesABZR87_RS04120 and ABZR87_RS04125 overlap by 1 nucleotides ABZR87_RS04110: ABZR87_RS04110 - ParB/RepB/Spo0J family partition protein, at 861,757 to 862,668 _RS04110 ABZR87_RS04115: ABZR87_RS04115 - ParA family protein, at 862,686 to 863,471 _RS04115 ABZR87_RS04120: ABZR87_RS04120 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 863,509 to 864,177 _RS04120 ABZR87_RS04125: ABZR87_RS04125 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 864,177 to 866,126 _RS04125 Position (kb) 863 864 865Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 862.747 kb on + strandat 862.747 kb on + strandat 863.290 kb on + strand, within ABZR87_RS04115at 863.316 kb on - strand, within ABZR87_RS04115at 863.463 kb on - strandat 863.497 kb on + strandat 863.497 kb on + strandat 863.497 kb on + strandat 863.497 kb on + strandat 863.732 kb on + strand, within ABZR87_RS04120at 864.043 kb on - strand, within ABZR87_RS04120at 864.045 kb on - strand, within ABZR87_RS04120at 864.045 kb on - strand, within ABZR87_RS04120at 864.045 kb on - strand, within ABZR87_RS04120at 864.078 kb on - strand, within ABZR87_RS04120at 864.078 kb on - strand, within ABZR87_RS04120at 864.078 kb on - strand, within ABZR87_RS04120at 864.078 kb on - strand, within ABZR87_RS04120at 864.446 kb on - strand, within ABZR87_RS04125at 864.446 kb on - strand, within ABZR87_RS04125at 864.446 kb on - strand, within ABZR87_RS04125at 864.446 kb on - strand, within ABZR87_RS04125at 864.455 kb on - strand, within ABZR87_RS04125at 864.455 kb on - strand, within ABZR87_RS04125at 864.455 kb on - strand, within ABZR87_RS04125at 864.532 kb on + strand, within ABZR87_RS04125at 864.549 kb on - strand, within ABZR87_RS04125at 864.549 kb on - strand, within ABZR87_RS04125at 864.605 kb on - strand, within ABZR87_RS04125at 864.843 kb on - strand, within ABZR87_RS04125at 864.843 kb on - strand, within ABZR87_RS04125at 864.843 kb on - strand, within ABZR87_RS04125at 864.843 kb on - strand, within ABZR87_RS04125at 864.848 kb on - strand, within ABZR87_RS04125at 864.899 kb on - strand, within ABZR87_RS04125at 864.899 kb on - strand, within ABZR87_RS04125at 864.899 kb on - strand, within ABZR87_RS04125at 865.037 kb on - strand, within ABZR87_RS04125at 865.085 kb on - strand, within ABZR87_RS04125at 865.085 kb on - strand, within ABZR87_RS04125at 865.085 kb on - strand, within ABZR87_RS04125

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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862,747 + -1.6
862,747 + +0.3
863,290 + ABZR87_RS04115 0.77 +1.9
863,316 - ABZR87_RS04115 0.80 -1.5
863,463 - -0.7
863,497 + +0.6
863,497 + -0.1
863,497 + +0.9
863,497 + -2.2
863,732 + ABZR87_RS04120 0.33 -1.0
864,043 - ABZR87_RS04120 0.80 -1.3
864,045 - ABZR87_RS04120 0.80 -0.5
864,045 - ABZR87_RS04120 0.80 -2.3
864,045 - ABZR87_RS04120 0.80 -1.3
864,078 - ABZR87_RS04120 0.85 -0.9
864,078 - ABZR87_RS04120 0.85 -0.5
864,078 - ABZR87_RS04120 0.85 -2.9
864,078 - ABZR87_RS04120 0.85 -2.6
864,446 - ABZR87_RS04125 0.14 -2.4
864,446 - ABZR87_RS04125 0.14 -0.5
864,446 - ABZR87_RS04125 0.14 -1.6
864,446 - ABZR87_RS04125 0.14 -1.6
864,455 - ABZR87_RS04125 0.14 -1.8
864,455 - ABZR87_RS04125 0.14 -1.8
864,455 - ABZR87_RS04125 0.14 -1.5
864,532 + ABZR87_RS04125 0.18 -2.7
864,549 - ABZR87_RS04125 0.19 -2.6
864,549 - ABZR87_RS04125 0.19 -2.5
864,605 - ABZR87_RS04125 0.22 -2.4
864,843 - ABZR87_RS04125 0.34 -0.1
864,843 - ABZR87_RS04125 0.34 -2.7
864,843 - ABZR87_RS04125 0.34 -2.0
864,843 - ABZR87_RS04125 0.34 -2.7
864,848 - ABZR87_RS04125 0.34 -0.9
864,899 - ABZR87_RS04125 0.37 -1.5
864,899 - ABZR87_RS04125 0.37 -2.7
864,899 - ABZR87_RS04125 0.37 -3.1
865,037 - ABZR87_RS04125 0.44 -3.0
865,085 - ABZR87_RS04125 0.47 -1.1
865,085 - ABZR87_RS04125 0.47 -2.3
865,085 - ABZR87_RS04125 0.47 -1.6

Or see this region's nucleotide sequence