Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03040

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03030 and ABZR87_RS03035 overlap by 4 nucleotidesABZR87_RS03035 and ABZR87_RS03040 overlap by 8 nucleotidesABZR87_RS03040 and ABZR87_RS03045 are separated by 22 nucleotidesABZR87_RS03045 and ABZR87_RS03050 are separated by 172 nucleotides ABZR87_RS03030: ABZR87_RS03030 - ABC transporter ATP-binding protein, at 635,926 to 637,023 _RS03030 ABZR87_RS03035: ABZR87_RS03035 - sugar ABC transporter permease, at 637,020 to 637,910 _RS03035 ABZR87_RS03040: ABZR87_RS03040 - carbohydrate ABC transporter permease, at 637,903 to 638,736 _RS03040 ABZR87_RS03045: ABZR87_RS03045 - DUF2160 domain-containing protein, at 638,759 to 639,040 _RS03045 ABZR87_RS03050: ABZR87_RS03050 - ABC transporter substrate-binding protein, at 639,213 to 640,958 _RS03050 Position (kb) 637 638 639Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 636.991 kb on + strandat 636.991 kb on + strandat 636.991 kb on + strandat 636.991 kb on + strandat 636.991 kb on + strandat 636.992 kb on - strandat 636.992 kb on - strandat 636.992 kb on - strandat 636.994 kb on + strandat 636.994 kb on + strandat 636.994 kb on + strandat 636.995 kb on - strandat 636.995 kb on - strandat 636.995 kb on - strandat 636.995 kb on - strandat 637.119 kb on + strand, within ABZR87_RS03035at 637.120 kb on - strand, within ABZR87_RS03035at 637.120 kb on - strand, within ABZR87_RS03035at 637.443 kb on + strand, within ABZR87_RS03035at 637.443 kb on + strand, within ABZR87_RS03035at 637.444 kb on - strand, within ABZR87_RS03035at 637.444 kb on - strand, within ABZR87_RS03035at 637.444 kb on - strand, within ABZR87_RS03035at 637.449 kb on + strand, within ABZR87_RS03035at 637.449 kb on + strand, within ABZR87_RS03035at 637.449 kb on + strand, within ABZR87_RS03035at 637.450 kb on - strand, within ABZR87_RS03035at 637.450 kb on - strand, within ABZR87_RS03035at 637.450 kb on - strand, within ABZR87_RS03035at 637.450 kb on - strand, within ABZR87_RS03035at 637.450 kb on - strand, within ABZR87_RS03035at 637.533 kb on + strand, within ABZR87_RS03035at 637.533 kb on + strand, within ABZR87_RS03035at 637.534 kb on - strand, within ABZR87_RS03035at 637.534 kb on - strand, within ABZR87_RS03035at 637.566 kb on + strand, within ABZR87_RS03035at 637.566 kb on + strand, within ABZR87_RS03035at 637.567 kb on - strand, within ABZR87_RS03035at 637.567 kb on - strand, within ABZR87_RS03035at 637.614 kb on + strand, within ABZR87_RS03035at 637.615 kb on - strand, within ABZR87_RS03035at 637.615 kb on - strand, within ABZR87_RS03035at 637.615 kb on - strand, within ABZR87_RS03035at 637.615 kb on - strand, within ABZR87_RS03035at 637.689 kb on + strand, within ABZR87_RS03035at 637.689 kb on + strand, within ABZR87_RS03035at 637.689 kb on + strand, within ABZR87_RS03035at 637.690 kb on - strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.815 kb on + strand, within ABZR87_RS03035at 637.816 kb on - strand, within ABZR87_RS03035at 637.816 kb on - strand, within ABZR87_RS03035at 637.851 kb on + strandat 637.851 kb on + strandat 637.852 kb on - strandat 637.908 kb on + strandat 637.908 kb on + strandat 637.909 kb on - strandat 637.969 kb on + strandat 637.969 kb on + strandat 637.969 kb on + strandat 637.969 kb on + strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.970 kb on - strandat 637.996 kb on + strand, within ABZR87_RS03040at 637.997 kb on - strand, within ABZR87_RS03040at 637.997 kb on - strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.083 kb on + strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.084 kb on - strand, within ABZR87_RS03040at 638.113 kb on + strand, within ABZR87_RS03040at 638.122 kb on + strand, within ABZR87_RS03040at 638.123 kb on - strand, within ABZR87_RS03040at 638.123 kb on - strand, within ABZR87_RS03040at 638.123 kb on - strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.140 kb on + strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.141 kb on - strand, within ABZR87_RS03040at 638.191 kb on + strand, within ABZR87_RS03040at 638.207 kb on - strand, within ABZR87_RS03040at 638.300 kb on - strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.431 kb on + strand, within ABZR87_RS03040at 638.444 kb on - strand, within ABZR87_RS03040at 638.444 kb on - strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.529 kb on + strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.530 kb on - strand, within ABZR87_RS03040at 638.701 kb on + strandat 638.701 kb on + strandat 638.702 kb on - strandat 638.702 kb on - strandat 638.936 kb on + strand, within ABZR87_RS03045at 638.936 kb on + strand, within ABZR87_RS03045at 638.936 kb on + strand, within ABZR87_RS03045at 638.937 kb on - strand, within ABZR87_RS03045at 638.937 kb on - strand, within ABZR87_RS03045at 638.938 kb on + strand, within ABZR87_RS03045at 638.938 kb on + strand, within ABZR87_RS03045at 638.938 kb on + strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 638.939 kb on - strand, within ABZR87_RS03045at 639.116 kb on + strandat 639.117 kb on - strandat 639.117 kb on - strandat 639.190 kb on + strandat 639.191 kb on - strandat 639.191 kb on - strandat 639.208 kb on + strandat 639.208 kb on + strandat 639.209 kb on - strandat 639.209 kb on - strandat 639.209 kb on - strandat 639.462 kb on + strand, within ABZR87_RS03050at 639.462 kb on + strand, within ABZR87_RS03050at 639.463 kb on - strand, within ABZR87_RS03050at 639.463 kb on - strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.588 kb on + strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.589 kb on - strand, within ABZR87_RS03050at 639.630 kb on + strand, within ABZR87_RS03050at 639.630 kb on + strand, within ABZR87_RS03050at 639.630 kb on + strand, within ABZR87_RS03050at 639.631 kb on - strand, within ABZR87_RS03050at 639.631 kb on - strand, within ABZR87_RS03050at 639.663 kb on + strand, within ABZR87_RS03050at 639.663 kb on + strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050at 639.664 kb on - strand, within ABZR87_RS03050

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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636,991 + -1.5
636,991 + -1.9
636,991 + -0.8
636,991 + +0.3
636,991 + -1.2
636,992 - -0.4
636,992 - +0.3
636,992 - +0.3
636,994 + -1.8
636,994 + -1.3
636,994 + -1.7
636,995 - -1.5
636,995 - -0.8
636,995 - +0.8
636,995 - +0.6
637,119 + ABZR87_RS03035 0.11 -0.9
637,120 - ABZR87_RS03035 0.11 -0.0
637,120 - ABZR87_RS03035 0.11 +0.3
637,443 + ABZR87_RS03035 0.47 +0.7
637,443 + ABZR87_RS03035 0.47 +0.2
637,444 - ABZR87_RS03035 0.48 +0.4
637,444 - ABZR87_RS03035 0.48 +0.6
637,444 - ABZR87_RS03035 0.48 -0.1
637,449 + ABZR87_RS03035 0.48 -1.2
637,449 + ABZR87_RS03035 0.48 -0.3
637,449 + ABZR87_RS03035 0.48 -2.3
637,450 - ABZR87_RS03035 0.48 +0.6
637,450 - ABZR87_RS03035 0.48 -0.7
637,450 - ABZR87_RS03035 0.48 +0.1
637,450 - ABZR87_RS03035 0.48 +0.8
637,450 - ABZR87_RS03035 0.48 -0.3
637,533 + ABZR87_RS03035 0.58 +0.2
637,533 + ABZR87_RS03035 0.58 -0.2
637,534 - ABZR87_RS03035 0.58 -0.3
637,534 - ABZR87_RS03035 0.58 +0.3
637,566 + ABZR87_RS03035 0.61 -0.9
637,566 + ABZR87_RS03035 0.61 -0.1
637,567 - ABZR87_RS03035 0.61 +0.5
637,567 - ABZR87_RS03035 0.61 +0.5
637,614 + ABZR87_RS03035 0.67 -0.6
637,615 - ABZR87_RS03035 0.67 -0.7
637,615 - ABZR87_RS03035 0.67 -0.8
637,615 - ABZR87_RS03035 0.67 +0.4
637,615 - ABZR87_RS03035 0.67 -0.3
637,689 + ABZR87_RS03035 0.75 -0.1
637,689 + ABZR87_RS03035 0.75 +1.0
637,689 + ABZR87_RS03035 0.75 -0.9
637,690 - ABZR87_RS03035 0.75 -0.3
637,815 + ABZR87_RS03035 0.89 +0.2
637,815 + ABZR87_RS03035 0.89 -0.9
637,815 + ABZR87_RS03035 0.89 -0.5
637,815 + ABZR87_RS03035 0.89 -1.8
637,815 + ABZR87_RS03035 0.89 -3.4
637,816 - ABZR87_RS03035 0.89 +2.1
637,816 - ABZR87_RS03035 0.89 +1.4
637,851 + -0.8
637,851 + +0.5
637,852 - -1.0
637,908 + +0.3
637,908 + -0.8
637,909 - +0.8
637,969 + +1.0
637,969 + -0.4
637,969 + +0.6
637,969 + -1.3
637,970 - +0.7
637,970 - -0.4
637,970 - +0.4
637,970 - +0.3
637,970 - -0.5
637,970 - +0.1
637,996 + ABZR87_RS03040 0.11 -0.2
637,997 - ABZR87_RS03040 0.11 +0.0
637,997 - ABZR87_RS03040 0.11 -0.1
638,083 + ABZR87_RS03040 0.22 -2.0
638,083 + ABZR87_RS03040 0.22 +0.5
638,083 + ABZR87_RS03040 0.22 -0.0
638,083 + ABZR87_RS03040 0.22 -0.4
638,084 - ABZR87_RS03040 0.22 -0.7
638,084 - ABZR87_RS03040 0.22 +0.5
638,084 - ABZR87_RS03040 0.22 +0.7
638,084 - ABZR87_RS03040 0.22 +0.6
638,084 - ABZR87_RS03040 0.22 +0.6
638,084 - ABZR87_RS03040 0.22 -0.4
638,113 + ABZR87_RS03040 0.25 +0.7
638,122 + ABZR87_RS03040 0.26 -1.4
638,123 - ABZR87_RS03040 0.26 +0.7
638,123 - ABZR87_RS03040 0.26 -1.1
638,123 - ABZR87_RS03040 0.26 +0.3
638,140 + ABZR87_RS03040 0.28 +0.4
638,140 + ABZR87_RS03040 0.28 -0.6
638,140 + ABZR87_RS03040 0.28 -0.6
638,140 + ABZR87_RS03040 0.28 -0.4
638,140 + ABZR87_RS03040 0.28 -1.5
638,140 + ABZR87_RS03040 0.28 -2.4
638,140 + ABZR87_RS03040 0.28 +0.1
638,140 + ABZR87_RS03040 0.28 -0.9
638,140 + ABZR87_RS03040 0.28 -2.4
638,141 - ABZR87_RS03040 0.29 +0.5
638,141 - ABZR87_RS03040 0.29 -0.5
638,141 - ABZR87_RS03040 0.29 -0.6
638,141 - ABZR87_RS03040 0.29 -1.3
638,141 - ABZR87_RS03040 0.29 +0.5
638,141 - ABZR87_RS03040 0.29 +0.4
638,191 + ABZR87_RS03040 0.35 -1.7
638,207 - ABZR87_RS03040 0.36 -0.8
638,300 - ABZR87_RS03040 0.48 -2.8
638,431 + ABZR87_RS03040 0.63 -1.0
638,431 + ABZR87_RS03040 0.63 -0.5
638,431 + ABZR87_RS03040 0.63 -0.7
638,444 - ABZR87_RS03040 0.65 -0.5
638,444 - ABZR87_RS03040 0.65 +0.8
638,529 + ABZR87_RS03040 0.75 -0.7
638,529 + ABZR87_RS03040 0.75 -1.6
638,529 + ABZR87_RS03040 0.75 +0.7
638,530 - ABZR87_RS03040 0.75 +0.1
638,530 - ABZR87_RS03040 0.75 +0.6
638,530 - ABZR87_RS03040 0.75 -0.4
638,530 - ABZR87_RS03040 0.75 +0.3
638,701 + -2.3
638,701 + +0.5
638,702 - -0.2
638,702 - +1.8
638,936 + ABZR87_RS03045 0.63 +1.3
638,936 + ABZR87_RS03045 0.63 +0.4
638,936 + ABZR87_RS03045 0.63 -0.4
638,937 - ABZR87_RS03045 0.63 +0.6
638,937 - ABZR87_RS03045 0.63 -0.2
638,938 + ABZR87_RS03045 0.63 -0.5
638,938 + ABZR87_RS03045 0.63 -2.3
638,938 + ABZR87_RS03045 0.63 -0.8
638,939 - ABZR87_RS03045 0.64 +0.1
638,939 - ABZR87_RS03045 0.64 -1.7
638,939 - ABZR87_RS03045 0.64 +0.0
638,939 - ABZR87_RS03045 0.64 +0.8
639,116 + -0.2
639,117 - +0.8
639,117 - -0.6
639,190 + -0.9
639,191 - +0.6
639,191 - -0.4
639,208 + +0.2
639,208 + +0.1
639,209 - -0.4
639,209 - -0.7
639,209 - +1.2
639,462 + ABZR87_RS03050 0.14 +1.0
639,462 + ABZR87_RS03050 0.14 -0.9
639,463 - ABZR87_RS03050 0.14 +0.4
639,463 - ABZR87_RS03050 0.14 +0.5
639,588 + ABZR87_RS03050 0.21 -1.1
639,588 + ABZR87_RS03050 0.21 +0.4
639,588 + ABZR87_RS03050 0.21 -2.6
639,588 + ABZR87_RS03050 0.21 -0.6
639,588 + ABZR87_RS03050 0.21 -1.4
639,589 - ABZR87_RS03050 0.22 -0.8
639,589 - ABZR87_RS03050 0.22 +0.8
639,589 - ABZR87_RS03050 0.22 +0.6
639,589 - ABZR87_RS03050 0.22 -0.9
639,589 - ABZR87_RS03050 0.22 +1.1
639,630 + ABZR87_RS03050 0.24 +0.3
639,630 + ABZR87_RS03050 0.24 +0.6
639,630 + ABZR87_RS03050 0.24 -0.1
639,631 - ABZR87_RS03050 0.24 +0.3
639,631 - ABZR87_RS03050 0.24 +0.2
639,663 + ABZR87_RS03050 0.26 -0.4
639,663 + ABZR87_RS03050 0.26 -0.6
639,664 - ABZR87_RS03050 0.26 +0.0
639,664 - ABZR87_RS03050 0.26 +0.0
639,664 - ABZR87_RS03050 0.26 -0.7
639,664 - ABZR87_RS03050 0.26 -1.5

Or see this region's nucleotide sequence