Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01530 and ABZR87_RS01535 are separated by 2 nucleotides ABZR87_RS01535 and ABZR87_RS01540 are separated by 53 nucleotides ABZR87_RS01540 and ABZR87_RS01545 are separated by 57 nucleotides
ABZR87_RS01530: ABZR87_RS01530 - dihydrodipicolinate synthase family protein, at 322,100 to 323,029
_RS01530
ABZR87_RS01535: ABZR87_RS01535 - Gfo/Idh/MocA family oxidoreductase, at 323,032 to 323,970
_RS01535
ABZR87_RS01540: ABZR87_RS01540 - arabinose ABC transporter substrate-binding protein, at 324,024 to 325,028
_RS01540
ABZR87_RS01545: ABZR87_RS01545 - L-arabinose ABC transporter ATP-binding protein AraG, at 325,086 to 326,615
_RS01545
Position (kb) 324
325
326 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 323.182 kb on + strand, within ABZR87_RS01535 at 323.182 kb on + strand, within ABZR87_RS01535 at 323.183 kb on - strand, within ABZR87_RS01535 at 323.183 kb on - strand, within ABZR87_RS01535 at 323.183 kb on - strand, within ABZR87_RS01535 at 323.376 kb on + strand, within ABZR87_RS01535 at 323.376 kb on + strand, within ABZR87_RS01535 at 323.376 kb on + strand, within ABZR87_RS01535 at 323.376 kb on + strand, within ABZR87_RS01535 at 323.376 kb on + strand, within ABZR87_RS01535 at 323.376 kb on + strand, within ABZR87_RS01535 at 323.377 kb on - strand, within ABZR87_RS01535 at 323.377 kb on - strand, within ABZR87_RS01535 at 323.377 kb on - strand, within ABZR87_RS01535 at 323.377 kb on - strand, within ABZR87_RS01535 at 323.848 kb on + strand, within ABZR87_RS01535 at 323.849 kb on - strand, within ABZR87_RS01535 at 323.984 kb on + strand at 323.984 kb on + strand at 323.984 kb on + strand at 323.984 kb on + strand at 323.985 kb on - strand at 323.985 kb on - strand at 323.985 kb on - strand at 323.985 kb on - strand at 323.985 kb on - strand at 323.985 kb on - strand at 323.988 kb on + strand at 323.989 kb on - strand at 323.989 kb on - strand at 323.989 kb on - strand at 323.989 kb on - strand at 323.989 kb on - strand at 324.357 kb on + strand, within ABZR87_RS01540 at 324.357 kb on + strand, within ABZR87_RS01540 at 324.357 kb on + strand, within ABZR87_RS01540 at 324.357 kb on + strand, within ABZR87_RS01540 at 324.358 kb on - strand, within ABZR87_RS01540 at 324.358 kb on - strand, within ABZR87_RS01540 at 324.358 kb on - strand, within ABZR87_RS01540 at 324.358 kb on - strand, within ABZR87_RS01540 at 324.544 kb on - strand, within ABZR87_RS01540 at 325.140 kb on + strand at 325.140 kb on + strand at 325.140 kb on + strand at 325.141 kb on - strand at 325.383 kb on + strand, within ABZR87_RS01545 at 325.383 kb on + strand, within ABZR87_RS01545 at 325.384 kb on - strand, within ABZR87_RS01545 at 325.384 kb on - strand, within ABZR87_RS01545 at 325.384 kb on - strand, within ABZR87_RS01545 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.714 kb on - strand, within ABZR87_RS01545 at 325.714 kb on - strand, within ABZR87_RS01545 at 325.714 kb on - strand, within ABZR87_RS01545 at 325.740 kb on + strand, within ABZR87_RS01545 at 325.740 kb on + strand, within ABZR87_RS01545 at 325.741 kb on - strand, within ABZR87_RS01545 at 325.741 kb on - strand, within ABZR87_RS01545 at 325.866 kb on + strand, within ABZR87_RS01545 at 325.867 kb on - strand, within ABZR87_RS01545 at 325.867 kb on - strand, within ABZR87_RS01545 at 325.872 kb on + strand, within ABZR87_RS01545 at 325.872 kb on + strand, within ABZR87_RS01545 at 325.922 kb on - strand, within ABZR87_RS01545
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 323,182 + ABZR87_RS01535 0.16 -2.8 323,182 + ABZR87_RS01535 0.16 -1.4 323,183 - ABZR87_RS01535 0.16 +0.3 323,183 - ABZR87_RS01535 0.16 +0.4 323,183 - ABZR87_RS01535 0.16 +0.6 323,376 + ABZR87_RS01535 0.37 -0.1 323,376 + ABZR87_RS01535 0.37 +0.5 323,376 + ABZR87_RS01535 0.37 -0.5 323,376 + ABZR87_RS01535 0.37 -1.4 323,376 + ABZR87_RS01535 0.37 +1.0 323,376 + ABZR87_RS01535 0.37 -0.3 323,377 - ABZR87_RS01535 0.37 +1.3 323,377 - ABZR87_RS01535 0.37 +1.6 323,377 - ABZR87_RS01535 0.37 +0.6 323,377 - ABZR87_RS01535 0.37 +0.2 323,848 + ABZR87_RS01535 0.87 +0.2 323,849 - ABZR87_RS01535 0.87 +0.8 323,984 + -2.5 323,984 + +0.3 323,984 + +1.1 323,984 + -0.4 323,985 - +0.2 323,985 - +2.1 323,985 - -0.1 323,985 - +1.1 323,985 - -0.1 323,985 - +2.8 323,988 + +0.2 323,989 - +1.0 323,989 - -0.3 323,989 - +0.6 323,989 - +0.1 323,989 - +0.0 324,357 + ABZR87_RS01540 0.33 +0.3 324,357 + ABZR87_RS01540 0.33 -0.2 324,357 + ABZR87_RS01540 0.33 -0.7 324,357 + ABZR87_RS01540 0.33 +1.4 324,358 - ABZR87_RS01540 0.33 +0.3 324,358 - ABZR87_RS01540 0.33 +0.5 324,358 - ABZR87_RS01540 0.33 -0.4 324,358 - ABZR87_RS01540 0.33 +0.6 324,544 - ABZR87_RS01540 0.52 -1.1 325,140 + +0.3 325,140 + +0.5 325,140 + +0.0 325,141 - +0.3 325,383 + ABZR87_RS01545 0.19 -0.4 325,383 + ABZR87_RS01545 0.19 -0.1 325,384 - ABZR87_RS01545 0.19 -0.7 325,384 - ABZR87_RS01545 0.19 +0.3 325,384 - ABZR87_RS01545 0.19 +0.1 325,713 + ABZR87_RS01545 0.41 -0.8 325,713 + ABZR87_RS01545 0.41 -0.3 325,713 + ABZR87_RS01545 0.41 +0.8 325,713 + ABZR87_RS01545 0.41 -0.1 325,714 - ABZR87_RS01545 0.41 -0.3 325,714 - ABZR87_RS01545 0.41 -0.3 325,714 - ABZR87_RS01545 0.41 -0.8 325,740 + ABZR87_RS01545 0.43 +0.3 325,740 + ABZR87_RS01545 0.43 -0.5 325,741 - ABZR87_RS01545 0.43 +0.7 325,741 - ABZR87_RS01545 0.43 -0.6 325,866 + ABZR87_RS01545 0.51 +0.1 325,867 - ABZR87_RS01545 0.51 -0.5 325,867 - ABZR87_RS01545 0.51 -1.2 325,872 + ABZR87_RS01545 0.51 +0.5 325,872 + ABZR87_RS01545 0.51 +0.2 325,922 - ABZR87_RS01545 0.55 +0.7
Or see this region's nucleotide sequence