Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01520

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01515 and ABZR87_RS01520 are separated by 201 nucleotidesABZR87_RS01520 and ABZR87_RS01525 are separated by 16 nucleotides ABZR87_RS01515: ABZR87_RS01515 - LysR family transcriptional regulator, at 317,850 to 318,794 _RS01515 ABZR87_RS01520: ABZR87_RS01520 - IlvD/Edd family dehydratase, at 318,996 to 320,732 _RS01520 ABZR87_RS01525: ABZR87_RS01525 - MFS transporter, at 320,749 to 322,074 _RS01525 Position (kb) 318 319 320 321Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 318.002 kb on - strand, within ABZR87_RS01515at 318.010 kb on + strand, within ABZR87_RS01515at 318.011 kb on - strand, within ABZR87_RS01515at 318.011 kb on - strand, within ABZR87_RS01515at 318.013 kb on + strand, within ABZR87_RS01515at 318.013 kb on + strand, within ABZR87_RS01515at 318.014 kb on - strand, within ABZR87_RS01515at 318.014 kb on - strand, within ABZR87_RS01515at 318.014 kb on - strand, within ABZR87_RS01515at 318.287 kb on - strand, within ABZR87_RS01515at 318.584 kb on - strand, within ABZR87_RS01515at 318.584 kb on - strand, within ABZR87_RS01515at 318.775 kb on + strandat 318.775 kb on + strandat 318.775 kb on + strandat 318.776 kb on - strandat 318.776 kb on - strandat 318.776 kb on - strandat 318.776 kb on - strandat 318.776 kb on - strandat 318.812 kb on - strandat 318.855 kb on + strandat 318.855 kb on + strandat 318.856 kb on - strandat 318.870 kb on + strandat 318.870 kb on + strandat 318.870 kb on + strandat 318.871 kb on - strandat 318.871 kb on - strandat 318.871 kb on - strandat 318.871 kb on - strandat 319.049 kb on + strandat 319.049 kb on + strandat 319.050 kb on - strandat 319.066 kb on - strandat 319.066 kb on - strandat 319.066 kb on - strandat 319.066 kb on - strandat 319.066 kb on - strandat 319.139 kb on + strandat 319.139 kb on + strandat 319.139 kb on + strandat 319.140 kb on - strandat 319.209 kb on + strand, within ABZR87_RS01520at 319.209 kb on + strand, within ABZR87_RS01520at 319.210 kb on - strand, within ABZR87_RS01520at 319.687 kb on - strand, within ABZR87_RS01520at 319.687 kb on - strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.956 kb on + strand, within ABZR87_RS01520at 319.957 kb on - strand, within ABZR87_RS01520at 319.957 kb on - strand, within ABZR87_RS01520at 319.957 kb on - strand, within ABZR87_RS01520at 319.959 kb on + strand, within ABZR87_RS01520at 319.959 kb on + strand, within ABZR87_RS01520at 320.250 kb on + strand, within ABZR87_RS01520at 320.250 kb on + strand, within ABZR87_RS01520at 320.250 kb on + strand, within ABZR87_RS01520at 320.251 kb on - strand, within ABZR87_RS01520at 320.251 kb on - strand, within ABZR87_RS01520at 320.440 kb on - strand, within ABZR87_RS01520at 320.592 kb on + strandat 320.593 kb on - strandat 320.593 kb on - strandat 320.640 kb on + strandat 320.640 kb on + strandat 320.641 kb on - strandat 320.641 kb on - strandat 320.860 kb on + strandat 320.860 kb on + strandat 320.861 kb on - strandat 320.861 kb on - strandat 320.861 kb on - strandat 320.872 kb on + strandat 320.872 kb on + strandat 320.872 kb on + strandat 320.872 kb on + strandat 320.873 kb on - strandat 320.873 kb on - strandat 320.874 kb on + strandat 320.874 kb on + strandat 320.875 kb on - strandat 320.889 kb on - strand, within ABZR87_RS01525at 320.924 kb on + strand, within ABZR87_RS01525at 320.924 kb on + strand, within ABZR87_RS01525at 320.924 kb on + strand, within ABZR87_RS01525at 320.944 kb on + strand, within ABZR87_RS01525at 320.977 kb on + strand, within ABZR87_RS01525at 320.977 kb on + strand, within ABZR87_RS01525at 320.978 kb on - strand, within ABZR87_RS01525at 320.985 kb on - strand, within ABZR87_RS01525at 321.109 kb on + strand, within ABZR87_RS01525at 321.109 kb on + strand, within ABZR87_RS01525at 321.109 kb on + strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.152 kb on - strand, within ABZR87_RS01525at 321.152 kb on - strand, within ABZR87_RS01525at 321.152 kb on - strand, within ABZR87_RS01525at 321.166 kb on + strand, within ABZR87_RS01525at 321.167 kb on - strand, within ABZR87_RS01525at 321.373 kb on - strand, within ABZR87_RS01525at 321.463 kb on + strand, within ABZR87_RS01525at 321.463 kb on + strand, within ABZR87_RS01525at 321.464 kb on - strand, within ABZR87_RS01525at 321.464 kb on - strand, within ABZR87_RS01525at 321.464 kb on - strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.560 kb on - strand, within ABZR87_RS01525at 321.643 kb on + strand, within ABZR87_RS01525at 321.644 kb on - strand, within ABZR87_RS01525at 321.644 kb on - strand, within ABZR87_RS01525at 321.668 kb on - strand, within ABZR87_RS01525at 321.668 kb on - strand, within ABZR87_RS01525at 321.668 kb on - strand, within ABZR87_RS01525at 321.706 kb on + strand, within ABZR87_RS01525at 321.706 kb on + strand, within ABZR87_RS01525at 321.706 kb on + strand, within ABZR87_RS01525

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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318,002 - ABZR87_RS01515 0.16 -0.5
318,010 + ABZR87_RS01515 0.17 -0.4
318,011 - ABZR87_RS01515 0.17 +0.9
318,011 - ABZR87_RS01515 0.17 -0.5
318,013 + ABZR87_RS01515 0.17 +0.1
318,013 + ABZR87_RS01515 0.17 +0.1
318,014 - ABZR87_RS01515 0.17 -0.4
318,014 - ABZR87_RS01515 0.17 +0.2
318,014 - ABZR87_RS01515 0.17 -0.4
318,287 - ABZR87_RS01515 0.46 +0.5
318,584 - ABZR87_RS01515 0.78 +1.4
318,584 - ABZR87_RS01515 0.78 +0.0
318,775 + -0.4
318,775 + +1.0
318,775 + -0.9
318,776 - -0.2
318,776 - +0.2
318,776 - +1.6
318,776 - -3.3
318,776 - -1.1
318,812 - +1.4
318,855 + +0.2
318,855 + +0.4
318,856 - -0.0
318,870 + +1.0
318,870 + -0.6
318,870 + +0.2
318,871 - +1.6
318,871 - +0.0
318,871 - -0.7
318,871 - -2.2
319,049 + -1.3
319,049 + -0.8
319,050 - +0.6
319,066 - -1.0
319,066 - +0.7
319,066 - -0.3
319,066 - +0.2
319,066 - -0.6
319,139 + +0.2
319,139 + +0.9
319,139 + +0.8
319,140 - -0.1
319,209 + ABZR87_RS01520 0.12 -0.7
319,209 + ABZR87_RS01520 0.12 +0.4
319,210 - ABZR87_RS01520 0.12 -0.4
319,687 - ABZR87_RS01520 0.40 +0.7
319,687 - ABZR87_RS01520 0.40 -1.0
319,956 + ABZR87_RS01520 0.55 +0.5
319,956 + ABZR87_RS01520 0.55 -1.2
319,956 + ABZR87_RS01520 0.55 +1.5
319,956 + ABZR87_RS01520 0.55 -2.5
319,956 + ABZR87_RS01520 0.55 +0.6
319,956 + ABZR87_RS01520 0.55 +1.5
319,956 + ABZR87_RS01520 0.55 -1.8
319,956 + ABZR87_RS01520 0.55 -0.9
319,956 + ABZR87_RS01520 0.55 -0.1
319,956 + ABZR87_RS01520 0.55 -1.5
319,957 - ABZR87_RS01520 0.55 +1.6
319,957 - ABZR87_RS01520 0.55 +1.0
319,957 - ABZR87_RS01520 0.55 +1.1
319,959 + ABZR87_RS01520 0.55 -0.1
319,959 + ABZR87_RS01520 0.55 +0.3
320,250 + ABZR87_RS01520 0.72 +1.4
320,250 + ABZR87_RS01520 0.72 -0.7
320,250 + ABZR87_RS01520 0.72 -0.1
320,251 - ABZR87_RS01520 0.72 +0.6
320,251 - ABZR87_RS01520 0.72 -1.0
320,440 - ABZR87_RS01520 0.83 +0.5
320,592 + +1.0
320,593 - +0.7
320,593 - -0.9
320,640 + +1.8
320,640 + +0.5
320,641 - -0.3
320,641 - -0.7
320,860 + +0.0
320,860 + +0.4
320,861 - -1.4
320,861 - -0.3
320,861 - +1.5
320,872 + -0.6
320,872 + -0.6
320,872 + -0.2
320,872 + -0.1
320,873 - +0.4
320,873 - +0.0
320,874 + +0.0
320,874 + -3.0
320,875 - +0.3
320,889 - ABZR87_RS01525 0.11 -1.3
320,924 + ABZR87_RS01525 0.13 +0.0
320,924 + ABZR87_RS01525 0.13 +0.6
320,924 + ABZR87_RS01525 0.13 -2.6
320,944 + ABZR87_RS01525 0.15 +0.2
320,977 + ABZR87_RS01525 0.17 -0.1
320,977 + ABZR87_RS01525 0.17 -0.5
320,978 - ABZR87_RS01525 0.17 +0.0
320,985 - ABZR87_RS01525 0.18 +0.2
321,109 + ABZR87_RS01525 0.27 +0.6
321,109 + ABZR87_RS01525 0.27 +0.3
321,109 + ABZR87_RS01525 0.27 -0.8
321,110 - ABZR87_RS01525 0.27 -3.0
321,110 - ABZR87_RS01525 0.27 +0.1
321,110 - ABZR87_RS01525 0.27 -0.0
321,110 - ABZR87_RS01525 0.27 -1.4
321,152 - ABZR87_RS01525 0.30 +0.7
321,152 - ABZR87_RS01525 0.30 -0.6
321,152 - ABZR87_RS01525 0.30 -0.3
321,166 + ABZR87_RS01525 0.31 -1.2
321,167 - ABZR87_RS01525 0.32 +1.3
321,373 - ABZR87_RS01525 0.47 -0.2
321,463 + ABZR87_RS01525 0.54 +2.6
321,463 + ABZR87_RS01525 0.54 +0.3
321,464 - ABZR87_RS01525 0.54 -0.2
321,464 - ABZR87_RS01525 0.54 -2.3
321,464 - ABZR87_RS01525 0.54 +2.1
321,559 + ABZR87_RS01525 0.61 -0.8
321,559 + ABZR87_RS01525 0.61 -0.7
321,559 + ABZR87_RS01525 0.61 +0.6
321,559 + ABZR87_RS01525 0.61 -1.7
321,559 + ABZR87_RS01525 0.61 -1.0
321,560 - ABZR87_RS01525 0.61 -0.2
321,643 + ABZR87_RS01525 0.67 +1.5
321,644 - ABZR87_RS01525 0.67 -0.6
321,644 - ABZR87_RS01525 0.67 +1.1
321,668 - ABZR87_RS01525 0.69 +0.7
321,668 - ABZR87_RS01525 0.69 +1.4
321,668 - ABZR87_RS01525 0.69 -0.3
321,706 + ABZR87_RS01525 0.72 +0.7
321,706 + ABZR87_RS01525 0.72 +0.1
321,706 + ABZR87_RS01525 0.72 -0.9

Or see this region's nucleotide sequence