Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01190

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01185 and ABZR87_RS01190 are separated by 28 nucleotidesABZR87_RS01190 and ABZR87_RS01195 are separated by 2 nucleotides ABZR87_RS01185: ABZR87_RS01185 - PilC/PilY family type IV pilus protein, at 244,429 to 247,698 _RS01185 ABZR87_RS01190: ABZR87_RS01190 - pilus assembly PilX N-terminal domain-containing protein, at 247,727 to 248,296 _RS01190 ABZR87_RS01195: ABZR87_RS01195 - PilW family protein, at 248,299 to 249,363 _RS01195 Position (kb) 247 248 249Strain fitness (log2 ratio) -2 -1 0 1 2at 246.782 kb on + strand, within ABZR87_RS01185at 246.782 kb on + strand, within ABZR87_RS01185at 246.782 kb on + strand, within ABZR87_RS01185at 246.782 kb on + strand, within ABZR87_RS01185at 246.782 kb on + strand, within ABZR87_RS01185at 246.782 kb on + strand, within ABZR87_RS01185at 246.783 kb on - strand, within ABZR87_RS01185at 246.783 kb on - strand, within ABZR87_RS01185at 246.783 kb on - strand, within ABZR87_RS01185at 246.783 kb on - strand, within ABZR87_RS01185at 246.830 kb on + strand, within ABZR87_RS01185at 246.830 kb on + strand, within ABZR87_RS01185at 246.830 kb on + strand, within ABZR87_RS01185at 246.831 kb on - strand, within ABZR87_RS01185at 246.831 kb on - strand, within ABZR87_RS01185at 246.831 kb on - strand, within ABZR87_RS01185at 246.929 kb on + strand, within ABZR87_RS01185at 246.929 kb on + strand, within ABZR87_RS01185at 246.929 kb on + strand, within ABZR87_RS01185at 246.929 kb on + strand, within ABZR87_RS01185at 246.930 kb on - strand, within ABZR87_RS01185at 246.930 kb on - strand, within ABZR87_RS01185at 246.968 kb on + strand, within ABZR87_RS01185at 246.969 kb on - strand, within ABZR87_RS01185at 246.969 kb on - strand, within ABZR87_RS01185at 247.104 kb on - strand, within ABZR87_RS01185at 247.104 kb on - strand, within ABZR87_RS01185at 247.104 kb on - strand, within ABZR87_RS01185at 247.154 kb on + strand, within ABZR87_RS01185at 247.154 kb on + strand, within ABZR87_RS01185at 247.154 kb on + strand, within ABZR87_RS01185at 247.154 kb on + strand, within ABZR87_RS01185at 247.154 kb on + strand, within ABZR87_RS01185at 247.154 kb on + strand, within ABZR87_RS01185at 247.154 kb on + strand, within ABZR87_RS01185at 247.155 kb on - strand, within ABZR87_RS01185at 247.155 kb on - strand, within ABZR87_RS01185at 247.155 kb on - strand, within ABZR87_RS01185at 247.155 kb on - strand, within ABZR87_RS01185at 247.190 kb on + strand, within ABZR87_RS01185at 247.191 kb on - strand, within ABZR87_RS01185at 247.268 kb on + strand, within ABZR87_RS01185at 247.268 kb on + strand, within ABZR87_RS01185at 247.268 kb on + strand, within ABZR87_RS01185at 247.268 kb on + strand, within ABZR87_RS01185at 247.269 kb on - strand, within ABZR87_RS01185at 247.269 kb on - strand, within ABZR87_RS01185at 247.269 kb on - strand, within ABZR87_RS01185at 247.269 kb on - strand, within ABZR87_RS01185at 247.269 kb on - strand, within ABZR87_RS01185at 247.439 kb on + strandat 247.439 kb on + strandat 247.440 kb on - strandat 247.440 kb on - strandat 247.598 kb on + strandat 247.599 kb on - strandat 247.599 kb on - strandat 247.608 kb on + strandat 247.609 kb on - strandat 247.698 kb on + strandat 247.698 kb on + strandat 247.698 kb on + strandat 247.699 kb on - strandat 247.699 kb on - strandat 247.699 kb on - strandat 247.699 kb on - strandat 247.699 kb on - strandat 247.728 kb on + strandat 247.728 kb on + strandat 247.728 kb on + strandat 247.954 kb on + strand, within ABZR87_RS01190at 247.955 kb on - strand, within ABZR87_RS01190at 247.955 kb on - strand, within ABZR87_RS01190at 247.955 kb on - strand, within ABZR87_RS01190at 247.972 kb on + strand, within ABZR87_RS01190at 247.973 kb on - strand, within ABZR87_RS01190at 247.973 kb on - strand, within ABZR87_RS01190at 247.973 kb on - strand, within ABZR87_RS01190at 248.025 kb on + strand, within ABZR87_RS01190at 248.025 kb on + strand, within ABZR87_RS01190at 248.026 kb on - strand, within ABZR87_RS01190at 248.026 kb on - strand, within ABZR87_RS01190at 248.113 kb on + strand, within ABZR87_RS01190at 248.113 kb on + strand, within ABZR87_RS01190at 248.114 kb on - strand, within ABZR87_RS01190at 248.114 kb on - strand, within ABZR87_RS01190at 248.148 kb on + strand, within ABZR87_RS01190at 248.149 kb on - strand, within ABZR87_RS01190at 248.360 kb on + strandat 248.360 kb on + strandat 248.361 kb on - strandat 248.405 kb on + strandat 248.405 kb on + strandat 248.405 kb on + strandat 248.405 kb on + strandat 248.405 kb on + strandat 248.406 kb on - strand, within ABZR87_RS01195at 248.406 kb on - strand, within ABZR87_RS01195at 248.406 kb on - strand, within ABZR87_RS01195at 248.416 kb on - strand, within ABZR87_RS01195at 248.516 kb on + strand, within ABZR87_RS01195at 248.533 kb on - strand, within ABZR87_RS01195at 248.570 kb on + strand, within ABZR87_RS01195at 248.570 kb on + strand, within ABZR87_RS01195at 248.609 kb on + strand, within ABZR87_RS01195at 248.672 kb on + strand, within ABZR87_RS01195at 248.741 kb on + strand, within ABZR87_RS01195at 248.741 kb on + strand, within ABZR87_RS01195at 248.741 kb on + strand, within ABZR87_RS01195at 248.742 kb on - strand, within ABZR87_RS01195at 248.873 kb on + strand, within ABZR87_RS01195at 248.996 kb on + strand, within ABZR87_RS01195at 248.996 kb on + strand, within ABZR87_RS01195at 249.002 kb on + strand, within ABZR87_RS01195at 249.002 kb on + strand, within ABZR87_RS01195at 249.002 kb on + strand, within ABZR87_RS01195at 249.002 kb on + strand, within ABZR87_RS01195at 249.003 kb on - strand, within ABZR87_RS01195at 249.003 kb on - strand, within ABZR87_RS01195at 249.003 kb on - strand, within ABZR87_RS01195at 249.003 kb on - strand, within ABZR87_RS01195at 249.161 kb on + strand, within ABZR87_RS01195at 249.161 kb on + strand, within ABZR87_RS01195at 249.227 kb on + strand, within ABZR87_RS01195at 249.227 kb on + strand, within ABZR87_RS01195at 249.227 kb on + strand, within ABZR87_RS01195at 249.227 kb on + strand, within ABZR87_RS01195at 249.227 kb on + strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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246,782 + ABZR87_RS01185 0.72 +0.3
246,782 + ABZR87_RS01185 0.72 +0.7
246,782 + ABZR87_RS01185 0.72 +0.5
246,782 + ABZR87_RS01185 0.72 -1.1
246,782 + ABZR87_RS01185 0.72 -0.3
246,782 + ABZR87_RS01185 0.72 -0.1
246,783 - ABZR87_RS01185 0.72 +1.4
246,783 - ABZR87_RS01185 0.72 -0.1
246,783 - ABZR87_RS01185 0.72 +1.0
246,783 - ABZR87_RS01185 0.72 -0.4
246,830 + ABZR87_RS01185 0.73 -1.7
246,830 + ABZR87_RS01185 0.73 +0.4
246,830 + ABZR87_RS01185 0.73 -1.0
246,831 - ABZR87_RS01185 0.73 -1.8
246,831 - ABZR87_RS01185 0.73 +1.5
246,831 - ABZR87_RS01185 0.73 +1.3
246,929 + ABZR87_RS01185 0.76 -0.2
246,929 + ABZR87_RS01185 0.76 +1.1
246,929 + ABZR87_RS01185 0.76 -0.7
246,929 + ABZR87_RS01185 0.76 -0.6
246,930 - ABZR87_RS01185 0.76 +0.9
246,930 - ABZR87_RS01185 0.76 -0.6
246,968 + ABZR87_RS01185 0.78 -0.2
246,969 - ABZR87_RS01185 0.78 -0.8
246,969 - ABZR87_RS01185 0.78 -0.2
247,104 - ABZR87_RS01185 0.82 +0.6
247,104 - ABZR87_RS01185 0.82 +0.5
247,104 - ABZR87_RS01185 0.82 -1.2
247,154 + ABZR87_RS01185 0.83 -0.8
247,154 + ABZR87_RS01185 0.83 -0.7
247,154 + ABZR87_RS01185 0.83 +0.3
247,154 + ABZR87_RS01185 0.83 -0.5
247,154 + ABZR87_RS01185 0.83 -0.0
247,154 + ABZR87_RS01185 0.83 +0.3
247,154 + ABZR87_RS01185 0.83 +0.4
247,155 - ABZR87_RS01185 0.83 +1.8
247,155 - ABZR87_RS01185 0.83 +0.2
247,155 - ABZR87_RS01185 0.83 +0.3
247,155 - ABZR87_RS01185 0.83 +0.6
247,190 + ABZR87_RS01185 0.84 -1.2
247,191 - ABZR87_RS01185 0.84 +0.9
247,268 + ABZR87_RS01185 0.87 -0.2
247,268 + ABZR87_RS01185 0.87 +1.4
247,268 + ABZR87_RS01185 0.87 -1.5
247,268 + ABZR87_RS01185 0.87 +1.9
247,269 - ABZR87_RS01185 0.87 -2.7
247,269 - ABZR87_RS01185 0.87 -1.3
247,269 - ABZR87_RS01185 0.87 +0.0
247,269 - ABZR87_RS01185 0.87 -1.0
247,269 - ABZR87_RS01185 0.87 +1.9
247,439 + -0.2
247,439 + +0.8
247,440 - -0.2
247,440 - +0.3
247,598 + +1.9
247,599 - -0.8
247,599 - -0.3
247,608 + +0.4
247,609 - +0.3
247,698 + -1.3
247,698 + +0.8
247,698 + +1.3
247,699 - +0.4
247,699 - +1.2
247,699 - -2.4
247,699 - +0.4
247,699 - -1.6
247,728 + +0.7
247,728 + +0.2
247,728 + +0.1
247,954 + ABZR87_RS01190 0.40 -1.0
247,955 - ABZR87_RS01190 0.40 +0.1
247,955 - ABZR87_RS01190 0.40 +0.9
247,955 - ABZR87_RS01190 0.40 +1.7
247,972 + ABZR87_RS01190 0.43 +0.2
247,973 - ABZR87_RS01190 0.43 +0.7
247,973 - ABZR87_RS01190 0.43 +0.7
247,973 - ABZR87_RS01190 0.43 -1.6
248,025 + ABZR87_RS01190 0.52 +0.5
248,025 + ABZR87_RS01190 0.52 +1.5
248,026 - ABZR87_RS01190 0.52 -0.8
248,026 - ABZR87_RS01190 0.52 +1.0
248,113 + ABZR87_RS01190 0.68 -0.6
248,113 + ABZR87_RS01190 0.68 -0.5
248,114 - ABZR87_RS01190 0.68 -0.1
248,114 - ABZR87_RS01190 0.68 +0.4
248,148 + ABZR87_RS01190 0.74 +0.6
248,149 - ABZR87_RS01190 0.74 +0.4
248,360 + +0.4
248,360 + -0.8
248,361 - -0.0
248,405 + -0.2
248,405 + +0.8
248,405 + +1.0
248,405 + -0.1
248,405 + +0.9
248,406 - ABZR87_RS01195 0.10 +0.0
248,406 - ABZR87_RS01195 0.10 -0.6
248,406 - ABZR87_RS01195 0.10 -0.4
248,416 - ABZR87_RS01195 0.11 -1.6
248,516 + ABZR87_RS01195 0.20 +1.1
248,533 - ABZR87_RS01195 0.22 +1.0
248,570 + ABZR87_RS01195 0.25 +0.9
248,570 + ABZR87_RS01195 0.25 -0.6
248,609 + ABZR87_RS01195 0.29 -0.3
248,672 + ABZR87_RS01195 0.35 +0.2
248,741 + ABZR87_RS01195 0.42 +0.0
248,741 + ABZR87_RS01195 0.42 +0.2
248,741 + ABZR87_RS01195 0.42 +0.0
248,742 - ABZR87_RS01195 0.42 +1.4
248,873 + ABZR87_RS01195 0.54 -0.2
248,996 + ABZR87_RS01195 0.65 -0.1
248,996 + ABZR87_RS01195 0.65 -0.9
249,002 + ABZR87_RS01195 0.66 +0.1
249,002 + ABZR87_RS01195 0.66 +2.3
249,002 + ABZR87_RS01195 0.66 -0.4
249,002 + ABZR87_RS01195 0.66 +0.3
249,003 - ABZR87_RS01195 0.66 +0.4
249,003 - ABZR87_RS01195 0.66 +0.7
249,003 - ABZR87_RS01195 0.66 -0.9
249,003 - ABZR87_RS01195 0.66 +0.2
249,161 + ABZR87_RS01195 0.81 +0.7
249,161 + ABZR87_RS01195 0.81 -0.8
249,227 + ABZR87_RS01195 0.87 +0.6
249,227 + ABZR87_RS01195 0.87 +0.1
249,227 + ABZR87_RS01195 0.87 +0.1
249,227 + ABZR87_RS01195 0.87 +0.5
249,227 + ABZR87_RS01195 0.87 -1.4
249,228 - ABZR87_RS01195 0.87 +0.8
249,228 - ABZR87_RS01195 0.87 -1.9
249,228 - ABZR87_RS01195 0.87 -0.2
249,228 - ABZR87_RS01195 0.87 -1.2
249,228 - ABZR87_RS01195 0.87 +0.7
249,228 - ABZR87_RS01195 0.87 -1.4

Or see this region's nucleotide sequence