Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01015 and ABZR87_RS01020 overlap by 8 nucleotides ABZR87_RS01020 and ABZR87_RS01025 are separated by 2 nucleotides ABZR87_RS01025 and ABZR87_RS01030 are separated by 25 nucleotides
ABZR87_RS01015: ABZR87_RS01015 - imidazolonepropionase, at 201,609 to 202,844
_RS01015
ABZR87_RS01020: ABZR87_RS01020 - formimidoylglutamase, at 202,837 to 203,814
_RS01020
ABZR87_RS01025: ABZR87_RS01025 - histidine ammonia-lyase, at 203,817 to 205,373
_RS01025
ABZR87_RS01030: ABZR87_RS01030 - urocanate hydratase, at 205,399 to 207,117
_RS01030
Position (kb) 203
204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 203.090 kb on + strand, within ABZR87_RS01020 at 203.091 kb on - strand, within ABZR87_RS01020 at 203.228 kb on + strand, within ABZR87_RS01020 at 203.228 kb on + strand, within ABZR87_RS01020 at 203.228 kb on + strand, within ABZR87_RS01020 at 203.229 kb on - strand, within ABZR87_RS01020 at 203.229 kb on - strand, within ABZR87_RS01020 at 203.229 kb on - strand, within ABZR87_RS01020 at 203.252 kb on + strand, within ABZR87_RS01020 at 203.252 kb on + strand, within ABZR87_RS01020 at 203.253 kb on - strand, within ABZR87_RS01020 at 203.341 kb on + strand, within ABZR87_RS01020 at 203.370 kb on + strand, within ABZR87_RS01020 at 203.929 kb on + strand at 203.929 kb on + strand at 203.929 kb on + strand at 203.929 kb on + strand at 203.930 kb on - strand at 203.930 kb on - strand at 203.932 kb on + strand at 203.932 kb on + strand at 203.932 kb on + strand at 204.385 kb on - strand, within ABZR87_RS01025 at 204.403 kb on + strand, within ABZR87_RS01025 at 204.403 kb on + strand, within ABZR87_RS01025 at 204.404 kb on - strand, within ABZR87_RS01025 at 204.512 kb on + strand, within ABZR87_RS01025 at 204.512 kb on + strand, within ABZR87_RS01025 at 204.513 kb on - strand, within ABZR87_RS01025 at 204.513 kb on - strand, within ABZR87_RS01025 at 204.514 kb on + strand, within ABZR87_RS01025 at 204.514 kb on + strand, within ABZR87_RS01025 at 204.514 kb on + strand, within ABZR87_RS01025 at 204.515 kb on - strand, within ABZR87_RS01025 at 204.515 kb on - strand, within ABZR87_RS01025 at 204.586 kb on + strand, within ABZR87_RS01025 at 205.373 kb on + strand at 205.373 kb on + strand at 205.373 kb on + strand at 205.373 kb on + strand at 205.373 kb on + strand at 205.374 kb on - strand at 205.374 kb on - strand at 205.374 kb on - strand at 205.374 kb on - strand at 205.395 kb on + strand at 205.396 kb on - strand at 205.396 kb on - strand at 205.396 kb on - strand at 205.396 kb on - strand at 205.396 kb on - strand at 205.400 kb on + strand at 205.401 kb on - strand at 205.401 kb on - strand at 205.577 kb on + strand, within ABZR87_RS01030 at 205.578 kb on - strand, within ABZR87_RS01030 at 205.949 kb on + strand, within ABZR87_RS01030 at 205.949 kb on + strand, within ABZR87_RS01030 at 205.949 kb on + strand, within ABZR87_RS01030 at 205.949 kb on + strand, within ABZR87_RS01030 at 205.949 kb on + strand, within ABZR87_RS01030 at 205.949 kb on + strand, within ABZR87_RS01030 at 205.949 kb on + strand, within ABZR87_RS01030 at 205.949 kb on + strand, within ABZR87_RS01030 at 205.949 kb on + strand, within ABZR87_RS01030 at 205.949 kb on + strand, within ABZR87_RS01030 at 205.950 kb on - strand, within ABZR87_RS01030 at 205.950 kb on - strand, within ABZR87_RS01030 at 205.950 kb on - strand, within ABZR87_RS01030 at 205.950 kb on - strand, within ABZR87_RS01030 at 205.950 kb on - strand, within ABZR87_RS01030 at 206.024 kb on + strand, within ABZR87_RS01030 at 206.024 kb on + strand, within ABZR87_RS01030 at 206.024 kb on + strand, within ABZR87_RS01030 at 206.024 kb on + strand, within ABZR87_RS01030 at 206.025 kb on - strand, within ABZR87_RS01030 at 206.025 kb on - strand, within ABZR87_RS01030 at 206.102 kb on + strand, within ABZR87_RS01030 at 206.103 kb on - strand, within ABZR87_RS01030 at 206.256 kb on - strand, within ABZR87_RS01030
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 203,090 + ABZR87_RS01020 0.26 +0.5 203,091 - ABZR87_RS01020 0.26 -0.2 203,228 + ABZR87_RS01020 0.40 +0.3 203,228 + ABZR87_RS01020 0.40 -1.1 203,228 + ABZR87_RS01020 0.40 -1.0 203,229 - ABZR87_RS01020 0.40 +0.1 203,229 - ABZR87_RS01020 0.40 +0.3 203,229 - ABZR87_RS01020 0.40 -0.4 203,252 + ABZR87_RS01020 0.42 -0.3 203,252 + ABZR87_RS01020 0.42 +0.3 203,253 - ABZR87_RS01020 0.43 +0.2 203,341 + ABZR87_RS01020 0.52 +0.0 203,370 + ABZR87_RS01020 0.54 +3.9 203,929 + +0.7 203,929 + -0.1 203,929 + +1.0 203,929 + -1.4 203,930 - +0.4 203,930 - -0.2 203,932 + +0.1 203,932 + -0.5 203,932 + +0.7 204,385 - ABZR87_RS01025 0.36 +2.1 204,403 + ABZR87_RS01025 0.38 +0.1 204,403 + ABZR87_RS01025 0.38 +0.4 204,404 - ABZR87_RS01025 0.38 +1.9 204,512 + ABZR87_RS01025 0.45 +0.4 204,512 + ABZR87_RS01025 0.45 -0.5 204,513 - ABZR87_RS01025 0.45 -0.0 204,513 - ABZR87_RS01025 0.45 -1.5 204,514 + ABZR87_RS01025 0.45 +0.2 204,514 + ABZR87_RS01025 0.45 +0.9 204,514 + ABZR87_RS01025 0.45 +0.0 204,515 - ABZR87_RS01025 0.45 +1.2 204,515 - ABZR87_RS01025 0.45 -0.1 204,586 + ABZR87_RS01025 0.49 -0.1 205,373 + -0.3 205,373 + +0.4 205,373 + +0.7 205,373 + +1.3 205,373 + -0.6 205,374 - +1.1 205,374 - +0.2 205,374 - +0.2 205,374 - -0.6 205,395 + -2.0 205,396 - +1.1 205,396 - -0.3 205,396 - -1.3 205,396 - -0.4 205,396 - -0.4 205,400 + +1.5 205,401 - -1.2 205,401 - -0.8 205,577 + ABZR87_RS01030 0.10 +1.5 205,578 - ABZR87_RS01030 0.10 +0.5 205,949 + ABZR87_RS01030 0.32 +0.4 205,949 + ABZR87_RS01030 0.32 +0.4 205,949 + ABZR87_RS01030 0.32 +1.6 205,949 + ABZR87_RS01030 0.32 +0.7 205,949 + ABZR87_RS01030 0.32 +1.0 205,949 + ABZR87_RS01030 0.32 +1.0 205,949 + ABZR87_RS01030 0.32 +0.7 205,949 + ABZR87_RS01030 0.32 +0.2 205,949 + ABZR87_RS01030 0.32 -0.2 205,949 + ABZR87_RS01030 0.32 +1.1 205,950 - ABZR87_RS01030 0.32 +0.5 205,950 - ABZR87_RS01030 0.32 -1.6 205,950 - ABZR87_RS01030 0.32 -1.0 205,950 - ABZR87_RS01030 0.32 -1.3 205,950 - ABZR87_RS01030 0.32 -1.2 206,024 + ABZR87_RS01030 0.36 -0.1 206,024 + ABZR87_RS01030 0.36 +1.8 206,024 + ABZR87_RS01030 0.36 +0.7 206,024 + ABZR87_RS01030 0.36 -0.1 206,025 - ABZR87_RS01030 0.36 +0.7 206,025 - ABZR87_RS01030 0.36 +0.7 206,102 + ABZR87_RS01030 0.41 +0.7 206,103 - ABZR87_RS01030 0.41 +0.1 206,256 - ABZR87_RS01030 0.50 +2.2
Or see this region's nucleotide sequence