Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00835 and ABZR87_RS00840 are separated by 86 nucleotides ABZR87_RS00840 and ABZR87_RS00845 are separated by 369 nucleotides ABZR87_RS00845 and ABZR87_RS00850 are separated by 142 nucleotides
ABZR87_RS00835: ABZR87_RS00835 - argininosuccinate synthase, at 167,560 to 168,897
_RS00835
ABZR87_RS00840: ABZR87_RS00840 - ornithine carbamoyltransferase, at 168,984 to 169,910
_RS00840
ABZR87_RS00845: ABZR87_RS00845 - DUF3579 domain-containing protein, at 170,280 to 170,603
_RS00845
ABZR87_RS00850: ABZR87_RS00850 - 30S ribosomal protein S20, at 170,746 to 171,012
_RS00850
Position (kb) 168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 167.986 kb on + strand, within ABZR87_RS00835 at 168.019 kb on + strand, within ABZR87_RS00835 at 168.019 kb on + strand, within ABZR87_RS00835 at 168.130 kb on + strand, within ABZR87_RS00835 at 168.131 kb on - strand, within ABZR87_RS00835 at 168.433 kb on + strand, within ABZR87_RS00835 at 168.433 kb on + strand, within ABZR87_RS00835 at 168.433 kb on + strand, within ABZR87_RS00835 at 168.434 kb on - strand, within ABZR87_RS00835 at 168.434 kb on - strand, within ABZR87_RS00835 at 168.434 kb on - strand, within ABZR87_RS00835 at 168.434 kb on - strand, within ABZR87_RS00835 at 168.434 kb on - strand, within ABZR87_RS00835 at 168.470 kb on - strand, within ABZR87_RS00835 at 168.517 kb on + strand, within ABZR87_RS00835 at 168.517 kb on + strand, within ABZR87_RS00835 at 168.517 kb on + strand, within ABZR87_RS00835 at 168.553 kb on + strand, within ABZR87_RS00835 at 168.554 kb on - strand, within ABZR87_RS00835 at 168.703 kb on + strand, within ABZR87_RS00835 at 168.704 kb on - strand, within ABZR87_RS00835 at 168.827 kb on - strand at 168.827 kb on - strand at 168.827 kb on - strand at 168.895 kb on + strand at 168.895 kb on + strand at 168.896 kb on - strand at 168.896 kb on - strand at 168.955 kb on + strand at 168.956 kb on - strand at 168.956 kb on - strand at 168.989 kb on - strand at 169.342 kb on + strand, within ABZR87_RS00840 at 169.798 kb on + strand, within ABZR87_RS00840 at 169.843 kb on + strand at 169.843 kb on + strand at 169.844 kb on - strand at 169.844 kb on - strand at 169.844 kb on - strand at 169.850 kb on - strand at 169.882 kb on + strand at 169.911 kb on - strand at 169.911 kb on - strand at 169.957 kb on - strand at 170.003 kb on + strand at 170.003 kb on + strand at 170.052 kb on - strand at 170.056 kb on + strand at 170.056 kb on + strand at 170.056 kb on + strand at 170.090 kb on + strand at 170.090 kb on + strand at 170.090 kb on + strand at 170.090 kb on + strand at 170.091 kb on - strand at 170.091 kb on - strand at 170.092 kb on + strand at 170.092 kb on + strand at 170.097 kb on + strand at 170.098 kb on - strand at 170.099 kb on + strand at 170.100 kb on - strand at 170.103 kb on - strand at 170.142 kb on - strand at 170.557 kb on + strand, within ABZR87_RS00845 at 170.557 kb on + strand, within ABZR87_RS00845 at 170.557 kb on + strand, within ABZR87_RS00845 at 170.557 kb on + strand, within ABZR87_RS00845 at 170.557 kb on + strand, within ABZR87_RS00845 at 170.557 kb on + strand, within ABZR87_RS00845 at 170.558 kb on - strand, within ABZR87_RS00845 at 170.558 kb on - strand, within ABZR87_RS00845 at 170.558 kb on - strand, within ABZR87_RS00845 at 170.558 kb on - strand, within ABZR87_RS00845 at 170.747 kb on + strand at 170.747 kb on + strand at 170.747 kb on + strand at 170.748 kb on - strand at 170.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 167,986 + ABZR87_RS00835 0.32 -1.4 168,019 + ABZR87_RS00835 0.34 -1.5 168,019 + ABZR87_RS00835 0.34 -2.2 168,130 + ABZR87_RS00835 0.43 -2.2 168,131 - ABZR87_RS00835 0.43 -1.5 168,433 + ABZR87_RS00835 0.65 +0.5 168,433 + ABZR87_RS00835 0.65 -1.9 168,433 + ABZR87_RS00835 0.65 -1.6 168,434 - ABZR87_RS00835 0.65 -1.5 168,434 - ABZR87_RS00835 0.65 -1.0 168,434 - ABZR87_RS00835 0.65 -1.6 168,434 - ABZR87_RS00835 0.65 -3.0 168,434 - ABZR87_RS00835 0.65 -1.7 168,470 - ABZR87_RS00835 0.68 -2.5 168,517 + ABZR87_RS00835 0.72 -1.3 168,517 + ABZR87_RS00835 0.72 -2.6 168,517 + ABZR87_RS00835 0.72 -1.0 168,553 + ABZR87_RS00835 0.74 -2.0 168,554 - ABZR87_RS00835 0.74 -2.2 168,703 + ABZR87_RS00835 0.85 -1.5 168,704 - ABZR87_RS00835 0.86 -2.2 168,827 - -1.3 168,827 - -2.4 168,827 - -0.5 168,895 + +0.7 168,895 + -1.2 168,896 - -2.4 168,896 - +0.5 168,955 + +0.1 168,956 - +0.4 168,956 - +1.2 168,989 - +1.6 169,342 + ABZR87_RS00840 0.39 -0.0 169,798 + ABZR87_RS00840 0.88 -1.5 169,843 + -1.3 169,843 + -1.6 169,844 - +0.5 169,844 - -0.8 169,844 - -1.3 169,850 - -0.5 169,882 + -0.5 169,911 - +1.0 169,911 - -0.9 169,957 - +0.5 170,003 + +0.1 170,003 + -0.2 170,052 - +0.4 170,056 + +0.2 170,056 + -0.7 170,056 + +1.2 170,090 + +1.0 170,090 + -0.8 170,090 + -3.3 170,090 + -3.7 170,091 - -0.2 170,091 - +1.2 170,092 + +0.2 170,092 + +0.8 170,097 + -0.2 170,098 - +3.1 170,099 + +2.5 170,100 - -0.5 170,103 - -0.8 170,142 - -0.3 170,557 + ABZR87_RS00845 0.85 +1.6 170,557 + ABZR87_RS00845 0.85 +0.3 170,557 + ABZR87_RS00845 0.85 -1.0 170,557 + ABZR87_RS00845 0.85 -1.2 170,557 + ABZR87_RS00845 0.85 +0.2 170,557 + ABZR87_RS00845 0.85 -0.3 170,558 - ABZR87_RS00845 0.86 +0.9 170,558 - ABZR87_RS00845 0.86 -0.3 170,558 - ABZR87_RS00845 0.86 +1.0 170,558 - ABZR87_RS00845 0.86 +0.5 170,747 + -0.1 170,747 + +0.5 170,747 + -0.2 170,748 - +0.6 170,748 - -0.2
Or see this region's nucleotide sequence