Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00695

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00685 and ABZR87_RS00690 are separated by 254 nucleotidesABZR87_RS00690 and ABZR87_RS00695 are separated by 146 nucleotidesABZR87_RS00695 and ABZR87_RS00700 are separated by 3 nucleotidesABZR87_RS00700 and ABZR87_RS00705 are separated by 52 nucleotides ABZR87_RS00685: ABZR87_RS00685 - hypothetical protein, at 139,604 to 140,116 _RS00685 ABZR87_RS00690: ABZR87_RS00690 - ester cyclase, at 140,371 to 140,916 _RS00690 ABZR87_RS00695: ABZR87_RS00695 - DUF2167 domain-containing protein, at 141,063 to 141,992 _RS00695 ABZR87_RS00700: ABZR87_RS00700 - site-2 protease family protein, at 141,996 to 142,715 _RS00700 ABZR87_RS00705: ABZR87_RS00705 - superoxide dismutase [Fe], at 142,768 to 143,346 _RS00705 Position (kb) 141 142Strain fitness (log2 ratio) -2 -1 0 1at 140.101 kb on + strandat 140.102 kb on - strandat 140.135 kb on + strandat 140.135 kb on + strandat 140.135 kb on + strandat 140.135 kb on + strandat 140.135 kb on + strandat 140.136 kb on - strandat 140.136 kb on - strandat 140.136 kb on - strandat 140.163 kb on + strandat 140.220 kb on + strandat 140.221 kb on - strandat 140.221 kb on - strandat 140.333 kb on + strandat 140.333 kb on + strandat 140.334 kb on - strandat 140.334 kb on - strandat 140.334 kb on - strandat 140.334 kb on - strandat 140.542 kb on + strand, within ABZR87_RS00690at 140.560 kb on - strand, within ABZR87_RS00690at 140.576 kb on - strand, within ABZR87_RS00690at 140.831 kb on - strand, within ABZR87_RS00690at 140.915 kb on - strandat 140.933 kb on - strandat 140.968 kb on - strandat 140.968 kb on - strandat 140.968 kb on - strandat 140.968 kb on - strandat 141.417 kb on + strand, within ABZR87_RS00695at 141.417 kb on + strand, within ABZR87_RS00695at 141.418 kb on - strand, within ABZR87_RS00695at 141.418 kb on - strand, within ABZR87_RS00695at 141.418 kb on - strand, within ABZR87_RS00695at 141.432 kb on + strand, within ABZR87_RS00695at 141.432 kb on + strand, within ABZR87_RS00695at 141.433 kb on - strand, within ABZR87_RS00695at 141.433 kb on - strand, within ABZR87_RS00695at 141.477 kb on + strand, within ABZR87_RS00695at 141.477 kb on + strand, within ABZR87_RS00695at 141.477 kb on + strand, within ABZR87_RS00695at 141.478 kb on - strand, within ABZR87_RS00695at 141.577 kb on - strand, within ABZR87_RS00695at 141.577 kb on - strand, within ABZR87_RS00695at 141.660 kb on + strand, within ABZR87_RS00695at 141.660 kb on + strand, within ABZR87_RS00695at 141.660 kb on + strand, within ABZR87_RS00695at 141.661 kb on - strand, within ABZR87_RS00695at 141.661 kb on - strand, within ABZR87_RS00695at 141.661 kb on - strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.669 kb on + strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.670 kb on - strand, within ABZR87_RS00695at 141.690 kb on + strand, within ABZR87_RS00695at 141.690 kb on + strand, within ABZR87_RS00695at 141.690 kb on + strand, within ABZR87_RS00695at 141.690 kb on + strand, within ABZR87_RS00695at 141.691 kb on - strand, within ABZR87_RS00695at 141.691 kb on - strand, within ABZR87_RS00695at 141.792 kb on + strand, within ABZR87_RS00695at 141.793 kb on - strand, within ABZR87_RS00695at 141.831 kb on + strand, within ABZR87_RS00695at 141.990 kb on + strandat 141.991 kb on - strandat 141.991 kb on - strandat 141.991 kb on - strandat 142.086 kb on + strand, within ABZR87_RS00700at 142.086 kb on + strand, within ABZR87_RS00700at 142.086 kb on + strand, within ABZR87_RS00700at 142.087 kb on - strand, within ABZR87_RS00700at 142.087 kb on - strand, within ABZR87_RS00700at 142.087 kb on - strand, within ABZR87_RS00700at 142.087 kb on - strand, within ABZR87_RS00700at 142.110 kb on + strand, within ABZR87_RS00700at 142.111 kb on - strand, within ABZR87_RS00700at 142.117 kb on + strand, within ABZR87_RS00700at 142.433 kb on + strand, within ABZR87_RS00700at 142.596 kb on + strand, within ABZR87_RS00700at 142.597 kb on - strand, within ABZR87_RS00700at 142.597 kb on - strand, within ABZR87_RS00700at 142.597 kb on - strand, within ABZR87_RS00700at 142.597 kb on - strand, within ABZR87_RS00700at 142.599 kb on + strand, within ABZR87_RS00700at 142.599 kb on + strand, within ABZR87_RS00700at 142.599 kb on + strand, within ABZR87_RS00700at 142.599 kb on + strand, within ABZR87_RS00700at 142.599 kb on + strand, within ABZR87_RS00700at 142.599 kb on + strand, within ABZR87_RS00700at 142.599 kb on + strand, within ABZR87_RS00700at 142.599 kb on + strand, within ABZR87_RS00700at 142.599 kb on + strand, within ABZR87_RS00700at 142.599 kb on + strand, within ABZR87_RS00700at 142.600 kb on - strand, within ABZR87_RS00700at 142.600 kb on - strand, within ABZR87_RS00700at 142.600 kb on - strand, within ABZR87_RS00700at 142.629 kb on + strand, within ABZR87_RS00700at 142.629 kb on + strand, within ABZR87_RS00700at 142.630 kb on - strand, within ABZR87_RS00700at 142.630 kb on - strand, within ABZR87_RS00700at 142.630 kb on - strand, within ABZR87_RS00700at 142.638 kb on + strand, within ABZR87_RS00700at 142.638 kb on + strand, within ABZR87_RS00700at 142.638 kb on + strand, within ABZR87_RS00700at 142.639 kb on - strand, within ABZR87_RS00700at 142.639 kb on - strand, within ABZR87_RS00700at 142.641 kb on + strand, within ABZR87_RS00700at 142.641 kb on + strand, within ABZR87_RS00700at 142.641 kb on + strand, within ABZR87_RS00700at 142.641 kb on + strand, within ABZR87_RS00700at 142.641 kb on + strand, within ABZR87_RS00700at 142.641 kb on + strand, within ABZR87_RS00700at 142.641 kb on + strand, within ABZR87_RS00700at 142.642 kb on - strand, within ABZR87_RS00700at 142.642 kb on - strand, within ABZR87_RS00700at 142.642 kb on - strand, within ABZR87_RS00700at 142.642 kb on - strand, within ABZR87_RS00700at 142.642 kb on - strand, within ABZR87_RS00700

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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140,101 + +0.5
140,102 - -0.1
140,135 + -2.1
140,135 + +0.5
140,135 + +0.9
140,135 + +0.4
140,135 + -0.2
140,136 - +0.4
140,136 - +1.7
140,136 - -0.5
140,163 + -0.4
140,220 + -0.7
140,221 - -0.2
140,221 - -0.1
140,333 + -0.0
140,333 + +0.0
140,334 - +1.1
140,334 - -0.7
140,334 - -0.7
140,334 - +0.4
140,542 + ABZR87_RS00690 0.31 +0.4
140,560 - ABZR87_RS00690 0.35 +1.4
140,576 - ABZR87_RS00690 0.38 +0.7
140,831 - ABZR87_RS00690 0.84 +0.4
140,915 - +0.0
140,933 - +0.0
140,968 - +0.3
140,968 - +0.2
140,968 - -1.4
140,968 - +0.5
141,417 + ABZR87_RS00695 0.38 -1.1
141,417 + ABZR87_RS00695 0.38 -0.4
141,418 - ABZR87_RS00695 0.38 +0.2
141,418 - ABZR87_RS00695 0.38 -1.2
141,418 - ABZR87_RS00695 0.38 -0.1
141,432 + ABZR87_RS00695 0.40 -0.3
141,432 + ABZR87_RS00695 0.40 +0.7
141,433 - ABZR87_RS00695 0.40 +0.5
141,433 - ABZR87_RS00695 0.40 -0.3
141,477 + ABZR87_RS00695 0.45 +0.7
141,477 + ABZR87_RS00695 0.45 -1.1
141,477 + ABZR87_RS00695 0.45 +0.5
141,478 - ABZR87_RS00695 0.45 -0.2
141,577 - ABZR87_RS00695 0.55 -0.8
141,577 - ABZR87_RS00695 0.55 +0.3
141,660 + ABZR87_RS00695 0.64 +0.7
141,660 + ABZR87_RS00695 0.64 +0.9
141,660 + ABZR87_RS00695 0.64 +0.2
141,661 - ABZR87_RS00695 0.64 -0.0
141,661 - ABZR87_RS00695 0.64 -0.1
141,661 - ABZR87_RS00695 0.64 -0.5
141,669 + ABZR87_RS00695 0.65 +0.4
141,669 + ABZR87_RS00695 0.65 +0.4
141,669 + ABZR87_RS00695 0.65 +0.1
141,669 + ABZR87_RS00695 0.65 -0.0
141,669 + ABZR87_RS00695 0.65 -0.6
141,669 + ABZR87_RS00695 0.65 -0.6
141,669 + ABZR87_RS00695 0.65 -0.5
141,669 + ABZR87_RS00695 0.65 -0.2
141,669 + ABZR87_RS00695 0.65 +1.1
141,669 + ABZR87_RS00695 0.65 -1.2
141,669 + ABZR87_RS00695 0.65 +0.9
141,669 + ABZR87_RS00695 0.65 +1.0
141,669 + ABZR87_RS00695 0.65 +0.4
141,669 + ABZR87_RS00695 0.65 -0.6
141,669 + ABZR87_RS00695 0.65 -2.5
141,670 - ABZR87_RS00695 0.65 +0.5
141,670 - ABZR87_RS00695 0.65 +0.4
141,670 - ABZR87_RS00695 0.65 +0.3
141,670 - ABZR87_RS00695 0.65 +1.2
141,670 - ABZR87_RS00695 0.65 +0.5
141,670 - ABZR87_RS00695 0.65 -1.2
141,670 - ABZR87_RS00695 0.65 +1.6
141,670 - ABZR87_RS00695 0.65 +0.1
141,670 - ABZR87_RS00695 0.65 +1.0
141,670 - ABZR87_RS00695 0.65 +1.4
141,670 - ABZR87_RS00695 0.65 +0.5
141,670 - ABZR87_RS00695 0.65 -1.5
141,670 - ABZR87_RS00695 0.65 +0.1
141,670 - ABZR87_RS00695 0.65 +0.5
141,670 - ABZR87_RS00695 0.65 +0.4
141,670 - ABZR87_RS00695 0.65 +0.3
141,670 - ABZR87_RS00695 0.65 +0.8
141,670 - ABZR87_RS00695 0.65 -0.5
141,670 - ABZR87_RS00695 0.65 +0.7
141,670 - ABZR87_RS00695 0.65 +1.4
141,690 + ABZR87_RS00695 0.67 +1.1
141,690 + ABZR87_RS00695 0.67 -0.5
141,690 + ABZR87_RS00695 0.67 +0.5
141,690 + ABZR87_RS00695 0.67 +0.8
141,691 - ABZR87_RS00695 0.68 -1.2
141,691 - ABZR87_RS00695 0.68 +1.4
141,792 + ABZR87_RS00695 0.78 -1.3
141,793 - ABZR87_RS00695 0.78 -0.2
141,831 + ABZR87_RS00695 0.83 -0.2
141,990 + -0.5
141,991 - +0.9
141,991 - +0.1
141,991 - -0.2
142,086 + ABZR87_RS00700 0.12 -0.7
142,086 + ABZR87_RS00700 0.12 -0.3
142,086 + ABZR87_RS00700 0.12 +0.5
142,087 - ABZR87_RS00700 0.13 +1.3
142,087 - ABZR87_RS00700 0.13 -1.5
142,087 - ABZR87_RS00700 0.13 -2.6
142,087 - ABZR87_RS00700 0.13 +1.0
142,110 + ABZR87_RS00700 0.16 +0.1
142,111 - ABZR87_RS00700 0.16 -0.5
142,117 + ABZR87_RS00700 0.17 +0.8
142,433 + ABZR87_RS00700 0.61 +0.5
142,596 + ABZR87_RS00700 0.83 +0.5
142,597 - ABZR87_RS00700 0.83 +0.2
142,597 - ABZR87_RS00700 0.83 -0.9
142,597 - ABZR87_RS00700 0.83 +0.1
142,597 - ABZR87_RS00700 0.83 +1.5
142,599 + ABZR87_RS00700 0.84 -0.9
142,599 + ABZR87_RS00700 0.84 +0.9
142,599 + ABZR87_RS00700 0.84 +0.7
142,599 + ABZR87_RS00700 0.84 -0.4
142,599 + ABZR87_RS00700 0.84 +0.0
142,599 + ABZR87_RS00700 0.84 +0.5
142,599 + ABZR87_RS00700 0.84 +0.2
142,599 + ABZR87_RS00700 0.84 +0.1
142,599 + ABZR87_RS00700 0.84 +0.8
142,599 + ABZR87_RS00700 0.84 -0.1
142,600 - ABZR87_RS00700 0.84 +0.6
142,600 - ABZR87_RS00700 0.84 -0.0
142,600 - ABZR87_RS00700 0.84 +1.5
142,629 + ABZR87_RS00700 0.88 +0.7
142,629 + ABZR87_RS00700 0.88 -1.1
142,630 - ABZR87_RS00700 0.88 -0.1
142,630 - ABZR87_RS00700 0.88 -0.3
142,630 - ABZR87_RS00700 0.88 -0.9
142,638 + ABZR87_RS00700 0.89 -0.8
142,638 + ABZR87_RS00700 0.89 +0.1
142,638 + ABZR87_RS00700 0.89 +0.2
142,639 - ABZR87_RS00700 0.89 +1.1
142,639 - ABZR87_RS00700 0.89 +1.0
142,641 + ABZR87_RS00700 0.90 -0.6
142,641 + ABZR87_RS00700 0.90 -0.8
142,641 + ABZR87_RS00700 0.90 -0.6
142,641 + ABZR87_RS00700 0.90 -2.0
142,641 + ABZR87_RS00700 0.90 -0.7
142,641 + ABZR87_RS00700 0.90 +0.6
142,641 + ABZR87_RS00700 0.90 +1.5
142,642 - ABZR87_RS00700 0.90 +0.2
142,642 - ABZR87_RS00700 0.90 -0.1
142,642 - ABZR87_RS00700 0.90 +1.6
142,642 - ABZR87_RS00700 0.90 -0.1
142,642 - ABZR87_RS00700 0.90 -0.8

Or see this region's nucleotide sequence