Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00175 and ABZR87_RS00180 are separated by 125 nucleotides ABZR87_RS00180 and ABZR87_RS00185 are separated by 15 nucleotides ABZR87_RS00185 and ABZR87_RS00190 are separated by 56 nucleotides
ABZR87_RS00175: ABZR87_RS00175 - LysR family transcriptional regulator, at 34,187 to 35,083
_RS00175
ABZR87_RS00180: ABZR87_RS00180 - NAD(P)-dependent alcohol dehydrogenase, at 35,209 to 36,225
_RS00180
ABZR87_RS00185: ABZR87_RS00185 - uroporphyrinogen-III C-methyltransferase, at 36,241 to 37,047
_RS00185
ABZR87_RS00190: ABZR87_RS00190 - sulfate adenylyltransferase subunit 1, at 37,104 to 38,411
_RS00190
Position (kb) 35
36
37 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 34.461 kb on + strand, within ABZR87_RS00175 at 34.763 kb on + strand, within ABZR87_RS00175 at 34.763 kb on + strand, within ABZR87_RS00175 at 35.062 kb on - strand at 35.065 kb on + strand at 35.066 kb on - strand at 35.066 kb on - strand at 35.066 kb on - strand at 35.066 kb on - strand at 35.066 kb on - strand at 35.138 kb on + strand at 35.139 kb on - strand at 35.139 kb on - strand at 35.139 kb on - strand at 35.329 kb on + strand, within ABZR87_RS00180 at 35.330 kb on - strand, within ABZR87_RS00180 at 35.330 kb on - strand, within ABZR87_RS00180 at 35.845 kb on + strand, within ABZR87_RS00180 at 35.846 kb on - strand, within ABZR87_RS00180 at 35.846 kb on - strand, within ABZR87_RS00180 at 35.992 kb on + strand, within ABZR87_RS00180 at 35.992 kb on + strand, within ABZR87_RS00180 at 36.050 kb on + strand, within ABZR87_RS00180 at 36.255 kb on + strand at 36.255 kb on + strand at 36.256 kb on - strand at 36.256 kb on - strand at 36.454 kb on + strand, within ABZR87_RS00185 at 36.512 kb on + strand, within ABZR87_RS00185 at 36.512 kb on + strand, within ABZR87_RS00185 at 36.512 kb on + strand, within ABZR87_RS00185 at 36.512 kb on + strand, within ABZR87_RS00185 at 36.513 kb on - strand, within ABZR87_RS00185 at 36.516 kb on - strand, within ABZR87_RS00185 at 36.699 kb on - strand, within ABZR87_RS00185 at 36.791 kb on + strand, within ABZR87_RS00185 at 36.792 kb on - strand, within ABZR87_RS00185 at 36.893 kb on + strand, within ABZR87_RS00185 at 36.894 kb on - strand, within ABZR87_RS00185 at 37.086 kb on + strand at 37.086 kb on + strand at 37.087 kb on - strand at 37.100 kb on + strand at 37.101 kb on - strand at 37.105 kb on + strand at 37.139 kb on + strand at 37.139 kb on + strand at 37.139 kb on + strand at 37.167 kb on - strand at 37.167 kb on - strand at 37.188 kb on - strand at 37.195 kb on + strand at 37.196 kb on - strand at 37.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 34,461 + ABZR87_RS00175 0.31 +0.1 34,763 + ABZR87_RS00175 0.64 +1.5 34,763 + ABZR87_RS00175 0.64 -0.4 35,062 - -0.1 35,065 + -0.1 35,066 - -0.4 35,066 - +2.1 35,066 - +1.1 35,066 - -1.8 35,066 - +0.7 35,138 + +0.4 35,139 - +1.1 35,139 - +0.5 35,139 - -0.2 35,329 + ABZR87_RS00180 0.12 +0.6 35,330 - ABZR87_RS00180 0.12 -0.7 35,330 - ABZR87_RS00180 0.12 -1.2 35,845 + ABZR87_RS00180 0.63 +0.1 35,846 - ABZR87_RS00180 0.63 +1.6 35,846 - ABZR87_RS00180 0.63 -0.8 35,992 + ABZR87_RS00180 0.77 +0.6 35,992 + ABZR87_RS00180 0.77 -0.2 36,050 + ABZR87_RS00180 0.83 -0.1 36,255 + +0.0 36,255 + +0.2 36,256 - +0.3 36,256 - +0.6 36,454 + ABZR87_RS00185 0.26 -2.1 36,512 + ABZR87_RS00185 0.34 -0.1 36,512 + ABZR87_RS00185 0.34 -3.0 36,512 + ABZR87_RS00185 0.34 -1.5 36,512 + ABZR87_RS00185 0.34 -1.5 36,513 - ABZR87_RS00185 0.34 -1.3 36,516 - ABZR87_RS00185 0.34 -0.8 36,699 - ABZR87_RS00185 0.57 -2.6 36,791 + ABZR87_RS00185 0.68 -1.8 36,792 - ABZR87_RS00185 0.68 -3.3 36,893 + ABZR87_RS00185 0.81 -2.5 36,894 - ABZR87_RS00185 0.81 -1.1 37,086 + -4.9 37,086 + -3.0 37,087 - +0.1 37,100 + -1.6 37,101 - -0.9 37,105 + -1.3 37,139 + -2.1 37,139 + -2.3 37,139 + -3.3 37,167 - -1.9 37,167 - -0.1 37,188 - -4.2 37,195 + -3.2 37,196 - -2.9 37,196 - -4.1
Or see this region's nucleotide sequence