Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004915

Experiment: Pectin 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin 10 g/L (C)
1,132,430	+		ABIE53_004914	0.53	+0.5
1,132,430	+		ABIE53_004914	0.53	-1.2
1,132,431	-		ABIE53_004914	0.53	-2.0
1,132,431	-		ABIE53_004914	0.53	-0.8
1,132,578	+		ABIE53_004914	0.62	-0.1
1,132,616	-		ABIE53_004914	0.65	-1.1
1,132,640	+		ABIE53_004914	0.66	-1.4
1,132,640	+		ABIE53_004914	0.66	+0.9
1,132,640	+		ABIE53_004914	0.66	-0.5
1,132,640	+		ABIE53_004914	0.66	+0.2
1,132,640	+		ABIE53_004914	0.66	-1.1
1,132,640	+		ABIE53_004914	0.66	-1.5
1,132,640	+		ABIE53_004914	0.66	-1.7
1,132,641	-		ABIE53_004914	0.66	-1.9
1,132,641	-		ABIE53_004914	0.66	-0.7
1,132,641	-		ABIE53_004914	0.66	-0.4
1,132,641	-		ABIE53_004914	0.66	-2.4
1,132,641	-		ABIE53_004914	0.66	-2.1
1,132,642	+		ABIE53_004914	0.66	+0.3
1,132,642	+		ABIE53_004914	0.66	-1.1
1,132,642	+		ABIE53_004914	0.66	-0.4
1,132,642	+		ABIE53_004914	0.66	+1.9
1,132,642	+		ABIE53_004914	0.66	-0.7
1,132,642	+		ABIE53_004914	0.66	+1.9
1,132,642	+		ABIE53_004914	0.66	-0.5
1,132,642	+		ABIE53_004914	0.66	-2.2
1,132,642	+		ABIE53_004914	0.66	-0.4
1,132,642	+		ABIE53_004914	0.66	+0.9
1,132,642	+		ABIE53_004914	0.66	+0.9
1,132,642	+		ABIE53_004914	0.66	+0.9
1,132,642	+		ABIE53_004914	0.66	-1.4
1,132,642	+		ABIE53_004914	0.66	-1.2
1,132,642	+		ABIE53_004914	0.66	-1.7
1,132,643	-		ABIE53_004914	0.66	+1.5
1,132,643	-		ABIE53_004914	0.66	+1.1
1,132,643	-		ABIE53_004914	0.66	-0.3
1,132,643	-		ABIE53_004914	0.66	+0.9
1,132,643	-		ABIE53_004914	0.66	-0.1
1,132,643	-		ABIE53_004914	0.66	-0.7
1,132,691	-		ABIE53_004914	0.69	-0.4
1,132,739	-		ABIE53_004914	0.72	+1.5
1,132,739	-		ABIE53_004914	0.72	-0.7
1,132,793	-		ABIE53_004914	0.76	-0.8
1,132,793	-		ABIE53_004914	0.76	+1.2
1,132,793	-		ABIE53_004914	0.76	-0.6
1,132,872	+		ABIE53_004914	0.81	-0.4
1,132,900	+		ABIE53_004914	0.83	+1.3
1,132,900	+		ABIE53_004914	0.83	+0.3
1,132,901	-		ABIE53_004914	0.83	-0.3
1,132,901	-		ABIE53_004914	0.83	-1.3
1,132,901	-		ABIE53_004914	0.83	-0.0
1,132,915	+		ABIE53_004914	0.84	-2.2
1,132,996	+		ABIE53_004914	0.89	+0.5
1,132,996	+		ABIE53_004914	0.89	+0.9
1,133,069	+				-0.1
1,133,070	-				+1.0
1,133,151	+				+0.9
1,133,152	-				-0.1
1,133,152	-				+2.2
1,133,152	-				-1.7
1,133,170	+				+0.9
1,133,170	+				-2.5
1,133,171	-				-0.4
1,133,201	+				+0.7
1,133,202	-				-0.9
1,133,227	+				+1.3
1,133,227	+				+1.1
1,133,228	-				+0.3
1,133,260	+				+1.5
1,133,274	+				-2.4
1,133,275	-				-0.0
1,133,322	+				-0.1
1,133,323	-				+0.9
1,133,332	+				-0.5
1,133,333	-				+0.9
1,133,333	-				-0.6
1,133,333	-				-0.2
1,133,333	-				-0.1
1,133,360	+				-0.1
1,133,361	-				-0.4
1,133,382	-				-2.4
1,133,443	+		ABIE53_004915	0.18	-2.3
1,133,444	-		ABIE53_004915	0.18	+0.9
1,133,444	-		ABIE53_004915	0.18	+0.9
1,133,455	+		ABIE53_004915	0.21	+0.9
1,133,455	+		ABIE53_004915	0.21	-0.3
1,133,455	+		ABIE53_004915	0.21	-0.7
1,133,455	+		ABIE53_004915	0.21	+0.0
1,133,456	-		ABIE53_004915	0.21	-2.7
1,133,456	-		ABIE53_004915	0.21	+2.6
1,133,464	+		ABIE53_004915	0.23	+3.2
1,133,464	+		ABIE53_004915	0.23	-0.7
1,133,464	+		ABIE53_004915	0.23	-2.3
1,133,464	+		ABIE53_004915	0.23	-0.1
1,133,465	-		ABIE53_004915	0.23	+0.2
1,133,569	+		ABIE53_004915	0.49	-2.5
1,133,569	+		ABIE53_004915	0.49	-0.4
1,133,569	+		ABIE53_004915	0.49	-0.7
1,133,569	+		ABIE53_004915	0.49	+1.5
1,133,569	+		ABIE53_004915	0.49	-2.4
1,133,569	+		ABIE53_004915	0.49	-1.0
1,133,569	+		ABIE53_004915	0.49	-0.9
1,133,570	-		ABIE53_004915	0.49	+1.2
1,133,570	-		ABIE53_004915	0.49	-1.1
1,133,570	-		ABIE53_004915	0.49	+0.0
1,133,570	-		ABIE53_004915	0.49	+0.9
1,133,577	+		ABIE53_004915	0.51	-0.9
1,133,579	+		ABIE53_004915	0.51	-2.1
1,133,579	+		ABIE53_004915	0.51	+0.3
1,133,579	+		ABIE53_004915	0.51	-0.7
1,133,579	+		ABIE53_004915	0.51	-0.9
1,133,579	+		ABIE53_004915	0.51	+0.1
1,133,579	+		ABIE53_004915	0.51	-0.7
1,133,579	+		ABIE53_004915	0.51	-0.1
1,133,579	+		ABIE53_004915	0.51	+1.5
1,133,579	+		ABIE53_004915	0.51	-0.1
1,133,580	-		ABIE53_004915	0.51	-0.1
1,133,580	-		ABIE53_004915	0.51	-1.2
1,133,580	-		ABIE53_004915	0.51	-0.1
1,133,580	-		ABIE53_004915	0.51	-0.5
1,133,580	-		ABIE53_004915	0.51	-0.9
1,133,580	-		ABIE53_004915	0.51	-1.6
1,133,580	-		ABIE53_004915	0.51	+1.9
1,133,580	-		ABIE53_004915	0.51	-2.9
1,133,580	-		ABIE53_004915	0.51	-0.1
1,133,580	-		ABIE53_004915	0.51	+0.9
1,133,580	-		ABIE53_004915	0.51	-1.4
1,133,580	-		ABIE53_004915	0.51	-0.4
1,133,580	-		ABIE53_004915	0.51	+0.1
1,133,599	-		ABIE53_004915	0.56	-0.2
1,133,603	+		ABIE53_004915	0.57	-0.7
1,133,603	+		ABIE53_004915	0.57	+1.7
1,133,604	-		ABIE53_004915	0.57	-1.0
1,133,604	-		ABIE53_004915	0.57	+0.9
1,133,606	+		ABIE53_004915	0.58	-0.1
1,133,606	+		ABIE53_004915	0.58	-0.0
1,133,606	+		ABIE53_004915	0.58	-0.1
1,133,607	-		ABIE53_004915	0.58	-0.0
1,133,607	-		ABIE53_004915	0.58	+1.9
1,133,611	+		ABIE53_004915	0.59	+0.5
1,133,611	+		ABIE53_004915	0.59	-1.0
1,133,611	+		ABIE53_004915	0.59	+2.5
1,133,611	+		ABIE53_004915	0.59	-0.1
1,133,611	+		ABIE53_004915	0.59	-0.7
1,133,612	-		ABIE53_004915	0.59	-1.0
1,133,706	+		ABIE53_004915	0.82	+2.9
1,133,707	-		ABIE53_004915	0.83	+1.6
1,133,707	-		ABIE53_004915	0.83	-0.1
1,133,707	-		ABIE53_004915	0.83	-0.0
1,133,707	-		ABIE53_004915	0.83	+0.9
1,133,707	-		ABIE53_004915	0.83	+1.2
1,133,707	-		ABIE53_004915	0.83	-0.4
1,133,777	+				+3.7
1,133,777	+				+0.6
1,133,777	+				+1.9
1,133,778	-				+1.1
1,133,778	-				+0.6
1,133,778	-				+1.9
1,133,778	-				-0.1
1,133,778	-				+0.5
1,133,778	-				-0.6
1,133,778	-				-0.4
1,133,887	+				+2.7
1,133,888	-				-1.0
1,133,888	-				-0.5
1,134,071	+				-0.7
1,134,071	+				+0.5
1,134,071	+				+0.5
1,134,071	+				+0.5
1,134,072	-				-0.7
1,134,072	-				-0.7
1,134,119	+				+2.5
1,134,120	-				+0.7
1,134,120	-				+0.1
1,134,120	-				+0.9
1,134,120	-				+0.4
1,134,120	-				-1.4
1,134,120	-				-1.1
1,134,250	-				+0.2
1,134,250	-				+1.3
1,134,265	+				-1.7
1,134,265	+				+0.9
1,134,265	+				+0.9
1,134,265	+				-2.4
1,134,265	+				+0.7
1,134,265	+				-0.1
1,134,265	+				-0.3
1,134,266	-				-0.7
1,134,272	+				+0.6
1,134,272	+				+0.5
1,134,272	+				-1.4
1,134,272	+				+1.9
1,134,273	-				+0.9
1,134,273	-				-0.2
1,134,273	-				-0.2
1,134,273	-				+0.4
1,134,276	+				-1.2
1,134,276	+				-0.3
1,134,276	+				-0.9
1,134,277	-				+0.9
1,134,277	-				-2.4
1,134,277	-				-0.7
1,134,277	-				+0.3
1,134,333	-				+0.9
1,134,494	+		ABIE53_004917	0.15	-0.8
1,134,494	+		ABIE53_004917	0.15	+1.6
1,134,494	+		ABIE53_004917	0.15	-0.9
1,134,495	-		ABIE53_004917	0.15	-0.1
1,134,495	-		ABIE53_004917	0.15	-0.4
1,134,542	+		ABIE53_004917	0.23	+0.1
1,134,542	+		ABIE53_004917	0.23	-1.7
1,134,543	-		ABIE53_004917	0.23	+0.9
1,134,543	-		ABIE53_004917	0.23	+0.6
1,134,543	-		ABIE53_004917	0.23	+1.9
1,134,543	-		ABIE53_004917	0.23	-0.9
1,134,587	+		ABIE53_004917	0.30	+0.4
1,134,587	+		ABIE53_004917	0.30	+0.5
1,134,587	+		ABIE53_004917	0.30	-0.2
1,134,587	+		ABIE53_004917	0.30	-0.6
1,134,588	-		ABIE53_004917	0.30	+0.9
1,134,588	-		ABIE53_004917	0.30	+0.9
1,134,588	-		ABIE53_004917	0.30	-0.6
1,134,630	+		ABIE53_004917	0.37	+2.9
1,134,638	+		ABIE53_004917	0.38	+0.9
1,134,641	+		ABIE53_004917	0.38	+0.9
1,134,642	-		ABIE53_004917	0.39	-3.0
1,134,776	+		ABIE53_004917	0.60	+3.5
1,134,776	+		ABIE53_004917	0.60	+1.9
1,134,776	+		ABIE53_004917	0.60	-1.7
1,134,776	+		ABIE53_004917	0.60	+0.9
1,134,776	+		ABIE53_004917	0.60	-0.4
1,134,777	-		ABIE53_004917	0.60	+1.5
1,134,777	-		ABIE53_004917	0.60	+0.4
1,134,777	-		ABIE53_004917	0.60	+1.5
1,134,777	-		ABIE53_004917	0.60	+0.2
1,134,777	-		ABIE53_004917	0.60	-0.3