Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002274

Experiment: Pectin 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin 10 g/L (C)
2,556,388	+				-0.6
2,556,388	+				-1.8
2,556,388	+				+0.7
2,556,388	+				+1.3
2,556,388	+				+1.7
2,556,388	+				+0.7
2,556,388	+				-1.9
2,556,388	+				+0.7
2,556,388	+				-0.9
2,556,389	-				-1.0
2,556,389	-				-1.4
2,556,389	-				-0.1
2,556,389	-				-0.3
2,556,389	-				+1.7
2,556,389	-				-0.9
2,556,389	-				-0.3
2,556,389	-				-2.3
2,556,389	-				-1.1
2,556,389	-				+2.5
2,556,560	+		ABIE53_002273	0.31	+0.4
2,556,561	-		ABIE53_002273	0.31	-1.6
2,556,619	+		ABIE53_002273	0.39	-1.3
2,556,619	+		ABIE53_002273	0.39	+0.7
2,556,619	+		ABIE53_002273	0.39	+1.7
2,556,619	+		ABIE53_002273	0.39	-0.0
2,556,619	+		ABIE53_002273	0.39	+0.7
2,556,619	+		ABIE53_002273	0.39	+1.7
2,556,620	-		ABIE53_002273	0.39	-2.7
2,556,620	-		ABIE53_002273	0.39	+0.2
2,556,628	+		ABIE53_002273	0.40	+2.1
2,556,628	+		ABIE53_002273	0.40	-0.7
2,556,629	-		ABIE53_002273	0.40	+4.2
2,556,629	-		ABIE53_002273	0.40	-1.0
2,556,629	-		ABIE53_002273	0.40	-0.5
2,556,654	-		ABIE53_002273	0.43	+2.7
2,556,737	-		ABIE53_002273	0.53	+0.2
2,556,817	+		ABIE53_002273	0.63	-0.3
2,556,817	+		ABIE53_002273	0.63	-0.5
2,556,818	-		ABIE53_002273	0.63	-0.3
2,556,818	-		ABIE53_002273	0.63	-0.3
2,556,818	-		ABIE53_002273	0.63	-0.6
2,556,818	-		ABIE53_002273	0.63	-1.5
2,556,836	+		ABIE53_002273	0.66	+0.7
2,556,859	+		ABIE53_002273	0.68	+0.7
2,556,860	-		ABIE53_002273	0.69	+2.3
2,556,898	+		ABIE53_002273	0.73	+1.7
2,556,898	+		ABIE53_002273	0.73	-1.6
2,556,899	-		ABIE53_002273	0.73	-0.3
2,556,899	-		ABIE53_002273	0.73	+0.5
2,556,899	-		ABIE53_002273	0.73	+0.7
2,557,060	+				-1.5
2,557,148	-				-1.1
2,557,334	+		ABIE53_002274	0.15	+0.7
2,557,361	-		ABIE53_002274	0.17	+2.3
2,557,361	-		ABIE53_002274	0.17	-3.2
2,557,361	-		ABIE53_002274	0.17	-0.3
2,557,361	-		ABIE53_002274	0.17	-0.3
2,557,368	-		ABIE53_002274	0.17	+0.4
2,557,368	-		ABIE53_002274	0.17	-0.9
2,557,731	+		ABIE53_002274	0.47	+0.3
2,557,731	+		ABIE53_002274	0.47	-0.6
2,557,731	+		ABIE53_002274	0.47	+2.1
2,557,731	+		ABIE53_002274	0.47	+0.7
2,557,732	-		ABIE53_002274	0.47	+2.7
2,557,732	-		ABIE53_002274	0.47	-1.3
2,557,732	-		ABIE53_002274	0.47	+1.1
2,557,973	+		ABIE53_002274	0.67	-0.1
2,557,973	+		ABIE53_002274	0.67	+0.7
2,557,973	+		ABIE53_002274	0.67	-0.1
2,557,973	+		ABIE53_002274	0.67	+0.7
2,557,974	-		ABIE53_002274	0.67	+0.7
2,557,974	-		ABIE53_002274	0.67	+0.7
2,557,974	-		ABIE53_002274	0.67	+2.0
2,557,974	-		ABIE53_002274	0.67	+0.7
2,557,974	-		ABIE53_002274	0.67	-0.0
2,557,995	+		ABIE53_002274	0.68	+2.3
2,557,996	-		ABIE53_002274	0.68	+1.7
2,557,996	-		ABIE53_002274	0.68	-0.2
2,558,012	+		ABIE53_002274	0.70	-0.9
2,558,115	-		ABIE53_002274	0.78	+2.7
2,558,115	-		ABIE53_002274	0.78	-0.4
2,558,115	-		ABIE53_002274	0.78	+0.7
2,558,148	-		ABIE53_002274	0.81	-1.1
2,558,306	+				-0.3
2,558,306	+				-1.8
2,558,306	+				-0.4
2,558,306	+				-1.0
2,558,307	-				-1.1
2,558,307	-				-0.3
2,558,307	-				-0.1
2,558,421	+				+0.2
2,558,421	+				-1.6
2,558,458	+				+0.9
2,558,480	+				-0.0
2,558,486	+				+0.1
2,558,487	-				-1.3
2,558,525	+				+1.7
2,558,525	+				+0.3
2,558,526	-				-0.3
2,558,526	-				-0.0
2,558,646	-		ABIE53_002275	0.15	-0.9
2,558,646	-		ABIE53_002275	0.15	+0.1
2,558,985	+		ABIE53_002275	0.54	-1.5
2,558,986	-		ABIE53_002275	0.54	-0.8
2,559,057	-		ABIE53_002275	0.62	-0.3
2,559,167	+		ABIE53_002275	0.74	-1.3
2,559,167	+		ABIE53_002275	0.74	-1.3
2,559,167	+		ABIE53_002275	0.74	+1.0
2,559,167	+		ABIE53_002275	0.74	+1.2
2,559,167	+		ABIE53_002275	0.74	+1.7
2,559,167	+		ABIE53_002275	0.74	+1.0
2,559,167	+		ABIE53_002275	0.74	+0.2
2,559,167	+		ABIE53_002275	0.74	+0.1
2,559,167	+		ABIE53_002275	0.74	-1.1
2,559,168	-		ABIE53_002275	0.75	+1.7
2,559,168	-		ABIE53_002275	0.75	-0.9
2,559,168	-		ABIE53_002275	0.75	+0.5
2,559,168	-		ABIE53_002275	0.75	+0.7
2,559,168	-		ABIE53_002275	0.75	-0.9
2,559,168	-		ABIE53_002275	0.75	-0.3
2,559,168	-		ABIE53_002275	0.75	+0.7
2,559,168	-		ABIE53_002275	0.75	-0.7
2,559,259	+		ABIE53_002275	0.85	-0.6
2,559,260	-		ABIE53_002275	0.85	+1.2
2,559,260	-		ABIE53_002275	0.85	-0.0
2,559,260	-		ABIE53_002275	0.85	+2.3
2,559,291	+		ABIE53_002275	0.89	-1.0
2,559,291	+		ABIE53_002275	0.89	+1.7