Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002225

Experiment: Pectin 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin 10 g/L (C)
2,499,546	+		ABIE53_002224	0.36	-0.8
2,499,546	+		ABIE53_002224	0.36	-0.8
2,499,546	+		ABIE53_002224	0.36	+0.9
2,499,546	+		ABIE53_002224	0.36	-1.3
2,499,546	+		ABIE53_002224	0.36	-0.8
2,499,546	+		ABIE53_002224	0.36	+0.7
2,499,547	-		ABIE53_002224	0.36	-0.1
2,499,547	-		ABIE53_002224	0.36	-0.0
2,499,547	-		ABIE53_002224	0.36	-0.5
2,499,547	-		ABIE53_002224	0.36	-0.8
2,499,547	-		ABIE53_002224	0.36	+0.9
2,499,547	-		ABIE53_002224	0.36	-0.6
2,499,547	-		ABIE53_002224	0.36	+0.7
2,499,810	+		ABIE53_002224	0.54	+1.5
2,499,811	-		ABIE53_002224	0.54	-2.4
2,499,913	+		ABIE53_002224	0.61	-3.2
2,499,913	+		ABIE53_002224	0.61	-1.3
2,499,914	-		ABIE53_002224	0.61	-0.6
2,499,914	-		ABIE53_002224	0.61	-0.2
2,499,914	-		ABIE53_002224	0.61	+1.3
2,499,917	+		ABIE53_002224	0.61	+1.3
2,499,918	-		ABIE53_002224	0.61	+0.7
2,499,918	-		ABIE53_002224	0.61	+2.2
2,499,918	-		ABIE53_002224	0.61	-1.6
2,499,963	+		ABIE53_002224	0.64	-1.8
2,500,032	+		ABIE53_002224	0.69	-1.0
2,500,033	-		ABIE53_002224	0.69	+2.3
2,500,217	-		ABIE53_002224	0.82	-2.4
2,500,485	+				-0.9
2,500,486	-				-0.3
2,500,486	-				-0.8
2,500,486	-				+2.3
2,500,486	-				-2.9
2,500,486	-				-2.4
2,500,486	-				+2.1
2,500,567	+		ABIE53_002225	0.17	-0.3
2,500,567	+		ABIE53_002225	0.17	+1.7
2,500,567	+		ABIE53_002225	0.17	+1.5
2,500,667	+		ABIE53_002225	0.46	+0.2
2,500,798	-		ABIE53_002225	0.85	-0.3
2,500,807	+		ABIE53_002225	0.87	+0.1
2,500,807	+		ABIE53_002225	0.87	+4.3
2,500,807	+		ABIE53_002225	0.87	+0.7
2,500,807	+		ABIE53_002225	0.87	-0.6
2,500,808	-		ABIE53_002225	0.87	+0.7
2,500,808	-		ABIE53_002225	0.87	-0.5
2,500,808	-		ABIE53_002225	0.87	-0.3
2,500,808	-		ABIE53_002225	0.87	-0.0
2,500,836	-				+0.7
2,500,836	-				+1.7
2,500,873	+				+0.7
2,500,873	+				-0.7
2,500,931	+				-0.7
2,501,094	+				-0.3
2,501,222	+		ABIE53_002226	0.22	+0.7
2,501,223	-		ABIE53_002226	0.22	-2.4
2,501,223	-		ABIE53_002226	0.22	+1.5
2,501,223	-		ABIE53_002226	0.22	+0.7
2,501,223	-		ABIE53_002226	0.22	-0.3
2,501,252	+		ABIE53_002226	0.27	+2.2
2,501,252	+		ABIE53_002226	0.27	+2.7
2,501,253	-		ABIE53_002226	0.27	-1.6
2,501,255	-		ABIE53_002226	0.28	+1.5
2,501,458	-		ABIE53_002226	0.62	-1.7
2,501,458	-		ABIE53_002226	0.62	+0.7
2,501,520	+		ABIE53_002226	0.73	+1.5
2,501,520	+		ABIE53_002226	0.73	-1.3
2,501,521	-		ABIE53_002226	0.73	+0.2
2,501,521	-		ABIE53_002226	0.73	-0.0
2,501,521	-		ABIE53_002226	0.73	+0.2
2,501,553	+		ABIE53_002226	0.78	-1.2
2,501,553	+		ABIE53_002226	0.78	+0.3
2,501,554	-		ABIE53_002226	0.78	-0.3
2,501,554	-		ABIE53_002226	0.78	-1.2
2,501,555	+		ABIE53_002226	0.79	-0.8
2,501,555	+		ABIE53_002226	0.79	+1.3
2,501,555	+		ABIE53_002226	0.79	+0.9
2,501,555	+		ABIE53_002226	0.79	+0.7
2,501,555	+		ABIE53_002226	0.79	+1.7
2,501,555	+		ABIE53_002226	0.79	+0.0
2,501,555	+		ABIE53_002226	0.79	+0.7
2,501,555	+		ABIE53_002226	0.79	+2.3
2,501,555	+		ABIE53_002226	0.79	-1.7
2,501,556	-		ABIE53_002226	0.79	-1.3
2,501,556	-		ABIE53_002226	0.79	-0.8
2,501,556	-		ABIE53_002226	0.79	+0.7
2,501,556	-		ABIE53_002226	0.79	-0.8
2,501,556	-		ABIE53_002226	0.79	-0.3
2,501,583	+		ABIE53_002226	0.83	-0.4
2,501,583	+		ABIE53_002226	0.83	+2.7
2,501,643	+				+0.7
2,501,802	-				+0.7
2,501,838	+				-0.8
2,501,839	-				+0.3