Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002118

Experiment: Pectin 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin 10 g/L (C)
2,374,887	+				-0.9
2,374,887	+				+1.8
2,374,887	+				+0.8
2,374,887	+				-0.2
2,374,887	+				-1.2
2,374,888	-				+0.8
2,374,901	+				-0.9
2,374,946	+				-0.7
2,374,946	+				-2.0
2,375,024	-				+1.4
2,375,024	-				-0.2
2,375,137	+				-0.3
2,375,137	+				+0.4
2,375,138	-				+1.6
2,375,138	-				+0.8
2,375,138	-				-2.8
2,375,138	-				-1.7
2,375,202	+				+1.8
2,375,202	+				-0.2
2,375,202	+				-0.2
2,375,203	-				+1.4
2,375,219	+				-2.6
2,375,219	+				+1.8
2,375,318	-		ABIE53_002118	0.35	+0.6
2,375,318	-		ABIE53_002118	0.35	+0.8
2,375,353	+		ABIE53_002118	0.48	-0.2
2,375,353	+		ABIE53_002118	0.48	-0.6
2,375,353	+		ABIE53_002118	0.48	-0.1
2,375,354	-		ABIE53_002118	0.48	+0.0
2,375,354	-		ABIE53_002118	0.48	+0.6
2,375,388	-		ABIE53_002118	0.60	+0.4
2,375,460	-		ABIE53_002118	0.87	+0.2
2,375,476	+				+0.0
2,375,488	+				-0.6
2,375,488	+				-0.8
2,375,679	+				+0.7
2,375,699	+				-1.0
2,375,699	+				-0.4
2,375,699	+				-0.1
2,375,699	+				+1.2
2,375,784	+				-0.8
2,375,784	+				-1.8
2,375,784	+				-1.8
2,375,784	+				-1.8
2,375,785	-				+1.2
2,375,785	-				-0.2
2,375,785	-				+2.1
2,375,785	-				+1.8
2,375,785	-				-1.0
2,375,785	-				-0.2
2,375,785	-				-0.8
2,375,785	-				-0.8
2,375,785	-				+1.4
2,375,785	-				-0.1
2,375,789	+				+2.8
2,375,789	+				+0.4
2,375,789	+				-0.8
2,375,789	+				-0.8
2,375,790	-				-0.8
2,375,790	-				+1.8
2,375,790	-				-0.2
2,375,790	-				+0.8
2,375,790	-				+0.2
2,375,790	-				-0.1
2,375,839	+				-1.6
2,375,990	-		ABIE53_002119	0.11	+0.2
2,376,080	+		ABIE53_002119	0.16	+2.1
2,376,080	+		ABIE53_002119	0.16	+2.4
2,376,080	+		ABIE53_002119	0.16	+0.4
2,376,081	-		ABIE53_002119	0.16	+0.3
2,376,106	-		ABIE53_002119	0.18	-0.0
2,376,249	+		ABIE53_002119	0.26	-1.6
2,376,249	+		ABIE53_002119	0.26	-1.4
2,376,250	-		ABIE53_002119	0.27	+0.8
2,376,250	-		ABIE53_002119	0.27	+0.2
2,376,355	+		ABIE53_002119	0.33	+0.8
2,376,355	+		ABIE53_002119	0.33	+0.0
2,376,355	+		ABIE53_002119	0.33	-1.6
2,376,356	-		ABIE53_002119	0.33	-0.3
2,376,356	-		ABIE53_002119	0.33	-0.3
2,376,420	-		ABIE53_002119	0.37	+0.8