Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001371

Experiment: Pectin 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin 10 g/L (C)
1,530,883	+				+0.8
1,530,883	+				+1.3
1,530,883	+				-0.5
1,530,884	-				+0.4
1,531,056	+				-1.3
1,531,056	+				+0.2
1,531,056	+				-0.5
1,531,056	+				+3.1
1,531,056	+				+0.0
1,531,057	-				+0.7
1,531,057	-				+0.8
1,531,057	-				-0.8
1,531,111	+				-2.4
1,531,111	+				+0.4
1,531,111	+				-0.5
1,531,112	-				-2.1
1,531,112	-				-0.4
1,531,112	-				-0.7
1,531,112	-				-0.8
1,531,151	+				+0.9
1,531,152	-				-1.5
1,531,164	-				-0.8
1,531,286	+		ABIE53_001370	0.27	-0.8
1,531,286	+		ABIE53_001370	0.27	+0.8
1,531,286	+		ABIE53_001370	0.27	-0.5
1,531,287	-		ABIE53_001370	0.27	-0.2
1,531,287	-		ABIE53_001370	0.27	+0.6
1,531,586	+		ABIE53_001370	0.87	-0.1
1,531,587	-		ABIE53_001370	0.87	+0.2
1,531,614	+				+0.4
1,531,733	+				-0.2
1,531,733	+				-2.0
1,531,734	-				-0.8
1,531,762	+				-0.2
1,531,762	+				-2.2
1,531,762	+				+2.4
1,531,762	+				+0.2
1,531,763	-				-1.0
1,531,763	-				-2.3
1,531,801	+				-0.1
1,531,802	-				-1.5
1,532,209	+		ABIE53_001371	0.86	-1.9
1,532,210	-		ABIE53_001371	0.86	+0.8
1,532,210	-		ABIE53_001371	0.86	+0.5
1,532,210	-		ABIE53_001371	0.86	-0.4
1,532,275	+				+0.6
1,532,275	+				-0.8
1,532,276	-				-1.3
1,532,364	+				-1.0
1,532,365	-				+0.3
1,532,365	-				+1.0
1,532,535	+				+0.3
1,532,535	+				-0.2
1,532,536	-				+0.1
1,532,536	-				-1.0
1,532,536	-				+1.2
1,532,536	-				+0.8
1,532,592	-		ABIE53_001372	0.18	+0.1
1,532,665	+		ABIE53_001372	0.37	-0.1
1,532,665	+		ABIE53_001372	0.37	-0.2
1,532,665	+		ABIE53_001372	0.37	+2.8
1,532,665	+		ABIE53_001372	0.37	-1.1
1,532,665	+		ABIE53_001372	0.37	-0.8
1,532,666	-		ABIE53_001372	0.37	-0.0
1,532,666	-		ABIE53_001372	0.37	+1.8
1,532,688	+		ABIE53_001372	0.43	+0.4
1,532,688	+		ABIE53_001372	0.43	-1.1
1,532,688	+		ABIE53_001372	0.43	+0.8
1,532,688	+		ABIE53_001372	0.43	-0.5
1,532,688	+		ABIE53_001372	0.43	+1.5
1,532,688	+		ABIE53_001372	0.43	-0.9
1,532,689	-		ABIE53_001372	0.43	-0.4
1,532,689	-		ABIE53_001372	0.43	-0.3
1,532,689	-		ABIE53_001372	0.43	+0.8
1,532,689	-		ABIE53_001372	0.43	-0.3
1,532,689	-		ABIE53_001372	0.43	-0.3
1,532,689	-		ABIE53_001372	0.43	-0.6
1,532,689	-		ABIE53_001372	0.43	+1.6
1,532,690	+		ABIE53_001372	0.43	-0.8
1,532,783	+		ABIE53_001372	0.67	+0.7
1,532,784	-		ABIE53_001372	0.67	-1.8
1,532,786	-		ABIE53_001372	0.68	+0.3
1,532,882	+				+0.1
1,532,883	-				-0.8
1,532,883	-				+2.4
1,532,883	-				-0.4
1,532,883	-				-0.1
1,532,909	+				+1.4
1,532,956	+				-2.5
1,532,956	+				-0.1
1,532,957	-				+0.8
1,532,957	-				+0.3
1,532,957	-				-0.3
1,532,996	+				-1.4
1,533,091	+		ABIE53_001373	0.32	-0.8
1,533,091	+		ABIE53_001373	0.32	-0.5
1,533,092	-		ABIE53_001373	0.32	+1.3
1,533,093	+		ABIE53_001373	0.33	+2.4
1,533,093	+		ABIE53_001373	0.33	-0.2
1,533,093	+		ABIE53_001373	0.33	-3.0
1,533,093	+		ABIE53_001373	0.33	-1.3
1,533,094	-		ABIE53_001373	0.33	-1.5
1,533,094	-		ABIE53_001373	0.33	-0.2
1,533,094	-		ABIE53_001373	0.33	-0.2
1,533,094	-		ABIE53_001373	0.33	-1.5
1,533,094	-		ABIE53_001373	0.33	-1.7
1,533,126	+		ABIE53_001373	0.45	-1.5
1,533,126	+		ABIE53_001373	0.45	+1.8
1,533,126	+		ABIE53_001373	0.45	-0.8
1,533,126	+		ABIE53_001373	0.45	+0.8
1,533,126	+		ABIE53_001373	0.45	-0.7
1,533,127	-		ABIE53_001373	0.45	-0.5
1,533,127	-		ABIE53_001373	0.45	-2.0
1,533,128	+		ABIE53_001373	0.46	-1.2
1,533,128	+		ABIE53_001373	0.46	-0.5
1,533,128	+		ABIE53_001373	0.46	-0.2
1,533,129	-		ABIE53_001373	0.46	-2.3
1,533,129	-		ABIE53_001373	0.46	-1.8
1,533,129	-		ABIE53_001373	0.46	-0.8
1,533,136	+		ABIE53_001373	0.49	-0.6
1,533,181	+		ABIE53_001373	0.65	+1.2
1,533,182	-		ABIE53_001373	0.66	-0.5
1,533,196	+		ABIE53_001373	0.71	-0.4