Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01165 and SMc01164 are separated by 119 nucleotides SMc01164 and SMc01163 are separated by 309 nucleotides
SMc01165: SMc01165 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) <small>(from data)</small>, at 383,852 to 385,804
SMc01165
SMc01164: SMc01164 - hypothetical protein, at 385,924 to 386,778
SMc01164
SMc01163: SMc01163 - oxidoreductase, at 387,088 to 388,218
SMc01163
Position (kb) 385
386
387 Strain fitness (log2 ratio) -2
-1
0
1
2 at 384.949 kb on + strand, within SMc01165 at 384.949 kb on + strand, within SMc01165 at 384.949 kb on + strand, within SMc01165 at 384.951 kb on + strand, within SMc01165 at 384.951 kb on + strand, within SMc01165 at 384.983 kb on - strand, within SMc01165 at 385.017 kb on + strand, within SMc01165 at 385.017 kb on + strand, within SMc01165 at 385.018 kb on - strand, within SMc01165 at 385.018 kb on - strand, within SMc01165 at 385.018 kb on - strand, within SMc01165 at 385.207 kb on - strand, within SMc01165 at 385.245 kb on - strand, within SMc01165 at 385.245 kb on - strand, within SMc01165 at 385.245 kb on - strand, within SMc01165 at 385.245 kb on - strand, within SMc01165 at 385.249 kb on + strand, within SMc01165 at 385.399 kb on + strand, within SMc01165 at 385.400 kb on - strand, within SMc01165 at 385.441 kb on - strand, within SMc01165 at 385.598 kb on + strand, within SMc01165 at 385.843 kb on + strand at 385.843 kb on + strand at 385.843 kb on + strand at 385.849 kb on + strand at 385.850 kb on - strand at 385.850 kb on - strand at 386.105 kb on - strand, within SMc01164 at 386.154 kb on - strand, within SMc01164 at 386.168 kb on - strand, within SMc01164 at 386.273 kb on + strand, within SMc01164 at 386.274 kb on - strand, within SMc01164 at 386.280 kb on + strand, within SMc01164 at 386.281 kb on - strand, within SMc01164 at 386.281 kb on - strand, within SMc01164 at 386.282 kb on + strand, within SMc01164 at 386.283 kb on - strand, within SMc01164 at 386.283 kb on - strand, within SMc01164 at 386.297 kb on + strand, within SMc01164 at 386.321 kb on + strand, within SMc01164 at 386.322 kb on - strand, within SMc01164 at 386.392 kb on - strand, within SMc01164 at 386.828 kb on + strand at 387.128 kb on + strand at 387.128 kb on + strand at 387.129 kb on - strand at 387.129 kb on - strand at 387.129 kb on - strand at 387.129 kb on - strand at 387.350 kb on + strand, within SMc01163 at 387.351 kb on - strand at 387.750 kb on + strand, within SMc01163 at 387.752 kb on - strand, within SMc01163
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 384,949 + SMc01165 0.56 -0.1 384,949 + SMc01165 0.56 -1.1 384,949 + SMc01165 0.56 -0.1 384,951 + SMc01165 0.56 +0.1 384,951 + SMc01165 0.56 -0.4 384,983 - SMc01165 0.58 -0.4 385,017 + SMc01165 0.60 +0.0 385,017 + SMc01165 0.60 -0.0 385,018 - SMc01165 0.60 -0.3 385,018 - SMc01165 0.60 -0.1 385,018 - SMc01165 0.60 -0.3 385,207 - SMc01165 0.69 +0.5 385,245 - SMc01165 0.71 -0.2 385,245 - SMc01165 0.71 -0.4 385,245 - SMc01165 0.71 -0.8 385,245 - SMc01165 0.71 -0.1 385,249 + SMc01165 0.72 +0.9 385,399 + SMc01165 0.79 -0.1 385,400 - SMc01165 0.79 -0.0 385,441 - SMc01165 0.81 +0.1 385,598 + SMc01165 0.89 -0.5 385,843 + -0.6 385,843 + +0.8 385,843 + +0.8 385,849 + -0.3 385,850 - -0.1 385,850 - +0.6 386,105 - SMc01164 0.21 -1.1 386,154 - SMc01164 0.27 -0.8 386,168 - SMc01164 0.29 -2.1 386,273 + SMc01164 0.41 -0.0 386,274 - SMc01164 0.41 -0.8 386,280 + SMc01164 0.42 -0.9 386,281 - SMc01164 0.42 -0.9 386,281 - SMc01164 0.42 -0.7 386,282 + SMc01164 0.42 -1.6 386,283 - SMc01164 0.42 -1.5 386,283 - SMc01164 0.42 -1.7 386,297 + SMc01164 0.44 -0.8 386,321 + SMc01164 0.46 -1.0 386,322 - SMc01164 0.47 -1.6 386,392 - SMc01164 0.55 -0.8 386,828 + +0.2 387,128 + +0.4 387,128 + +0.2 387,129 - -0.4 387,129 - +0.6 387,129 - -0.2 387,129 - -0.4 387,350 + SMc01163 0.23 -0.8 387,351 - -0.8 387,750 + SMc01163 0.59 +2.2 387,752 - SMc01163 0.59 -0.1
Or see this region's nucleotide sequence