Strain Fitness in Sinorhizobium meliloti 1021 around SMc00978

Experiment: pipercolic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00979 and SMc00978 are separated by 472 nucleotidesSMc00978 and SMc00977 are separated by 177 nucleotides SMc00979: SMc00979 - hypothetical protein, at 958,741 to 959,154 SMc00979 SMc00978: SMc00978 - hypothetical protein, at 959,627 to 960,616 SMc00978 SMc00977: SMc00977 - acyl-CoA dehydrogenase, at 960,794 to 962,575 SMc00977 Position (kb) 959 960 961Strain fitness (log2 ratio) -2 -1 0 1 2 3at 958.678 kb on - strandat 958.886 kb on - strand, within SMc00979at 958.888 kb on + strand, within SMc00979at 958.906 kb on + strand, within SMc00979at 958.907 kb on - strand, within SMc00979at 958.907 kb on - strand, within SMc00979at 958.913 kb on - strand, within SMc00979at 958.957 kb on + strand, within SMc00979at 958.961 kb on - strand, within SMc00979at 958.975 kb on + strand, within SMc00979at 959.000 kb on + strand, within SMc00979at 959.065 kb on + strand, within SMc00979at 959.074 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.105 kb on - strand, within SMc00979at 959.114 kb on - strandat 959.114 kb on - strandat 959.116 kb on - strandat 959.149 kb on - strandat 959.164 kb on + strandat 959.165 kb on - strandat 959.166 kb on + strandat 959.166 kb on + strandat 959.167 kb on - strandat 959.356 kb on + strandat 959.356 kb on + strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.371 kb on + strandat 959.400 kb on + strandat 959.401 kb on - strandat 959.545 kb on + strandat 959.597 kb on + strandat 959.598 kb on - strandat 959.607 kb on - strandat 959.608 kb on + strandat 959.608 kb on + strandat 959.609 kb on - strandat 959.609 kb on - strandat 959.609 kb on - strandat 959.632 kb on + strandat 959.803 kb on + strand, within SMc00978at 959.803 kb on + strand, within SMc00978at 959.805 kb on + strand, within SMc00978at 959.805 kb on + strand, within SMc00978at 959.805 kb on + strand, within SMc00978at 959.805 kb on + strand, within SMc00978at 959.805 kb on + strand, within SMc00978at 959.806 kb on - strandat 959.806 kb on - strand, within SMc00978at 959.806 kb on - strand, within SMc00978at 959.806 kb on - strand, within SMc00978at 959.806 kb on - strand, within SMc00978at 959.938 kb on + strand, within SMc00978at 959.939 kb on - strand, within SMc00978at 960.081 kb on + strand, within SMc00978at 960.096 kb on - strand, within SMc00978at 960.593 kb on + strandat 960.593 kb on + strandat 960.593 kb on + strandat 960.593 kb on + strandat 960.593 kb on + strandat 960.594 kb on - strandat 960.594 kb on - strandat 960.653 kb on - strandat 960.653 kb on - strandat 960.653 kb on - strandat 960.744 kb on + strandat 960.745 kb on - strandat 960.745 kb on - strandat 960.763 kb on + strandat 960.764 kb on - strandat 960.797 kb on + strandat 960.797 kb on + strandat 960.797 kb on + strandat 960.797 kb on + strandat 960.798 kb on - strandat 960.798 kb on - strandat 960.798 kb on - strandat 960.798 kb on - strandat 960.798 kb on - strandat 960.798 kb on - strandat 960.798 kb on - strandat 961.349 kb on + strand, within SMc00977at 961.350 kb on - strand, within SMc00977at 961.350 kb on - strand, within SMc00977at 961.350 kb on - strand, within SMc00977at 961.350 kb on - strand, within SMc00977at 961.408 kb on + strand, within SMc00977at 961.422 kb on + strand, within SMc00977at 961.592 kb on + strand, within SMc00977

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Per-strain Table

Position Strand Gene LocusTag Fraction pipercolic (C)
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958,678 - +0.0
958,886 - SMc00979 0.35 +1.3
958,888 + SMc00979 0.36 -0.3
958,906 + SMc00979 0.40 +0.2
958,907 - SMc00979 0.40 -0.9
958,907 - SMc00979 0.40 -1.1
958,913 - SMc00979 0.42 +2.4
958,957 + SMc00979 0.52 -0.4
958,961 - SMc00979 0.53 +0.0
958,975 + SMc00979 0.57 -1.5
959,000 + SMc00979 0.63 -0.0
959,065 + SMc00979 0.78 +0.1
959,074 + SMc00979 0.80 -0.4
959,104 + SMc00979 0.88 -1.6
959,104 + SMc00979 0.88 -0.4
959,104 + SMc00979 0.88 -0.5
959,104 + SMc00979 0.88 +0.4
959,104 + SMc00979 0.88 -0.0
959,105 - SMc00979 0.88 +0.1
959,114 - +0.1
959,114 - -0.1
959,116 - -1.6
959,149 - -1.4
959,164 + +1.0
959,165 - +1.6
959,166 + -2.1
959,166 + -0.0
959,167 - -0.3
959,356 + -0.1
959,356 + +0.3
959,357 - +0.0
959,357 - +0.1
959,357 - -0.4
959,371 + +0.7
959,400 + +1.7
959,401 - -0.3
959,545 + +0.9
959,597 + +0.1
959,598 - -0.3
959,607 - +1.4
959,608 + -0.3
959,608 + +0.4
959,609 - +0.4
959,609 - +0.9
959,609 - -0.3
959,632 + +0.9
959,803 + SMc00978 0.18 -0.2
959,803 + SMc00978 0.18 +0.7
959,805 + SMc00978 0.18 +1.2
959,805 + SMc00978 0.18 +0.1
959,805 + SMc00978 0.18 +0.2
959,805 + SMc00978 0.18 -0.8
959,805 + SMc00978 0.18 +0.5
959,806 - +0.1
959,806 - SMc00978 0.18 -0.4
959,806 - SMc00978 0.18 +0.2
959,806 - SMc00978 0.18 +1.6
959,806 - SMc00978 0.18 +0.4
959,938 + SMc00978 0.31 -0.2
959,939 - SMc00978 0.32 +1.2
960,081 + SMc00978 0.46 +0.1
960,096 - SMc00978 0.47 +1.4
960,593 + +0.1
960,593 + +0.1
960,593 + -0.2
960,593 + +0.4
960,593 + -1.4
960,594 - +0.7
960,594 - -0.8
960,653 - -0.6
960,653 - -0.4
960,653 - -0.5
960,744 + -0.2
960,745 - +1.0
960,745 - +0.9
960,763 + +0.0
960,764 - +1.3
960,797 + -0.2
960,797 + +0.8
960,797 + -2.1
960,797 + -0.0
960,798 - +0.9
960,798 - +1.2
960,798 - +0.4
960,798 - +3.0
960,798 - +0.1
960,798 - -0.9
960,798 - +0.6
961,349 + SMc00977 0.31 -0.9
961,350 - SMc00977 0.31 -0.2
961,350 - SMc00977 0.31 -0.9
961,350 - SMc00977 0.31 +0.5
961,350 - SMc00977 0.31 +0.3
961,408 + SMc00977 0.34 +1.1
961,422 + SMc00977 0.35 -0.9
961,592 + SMc00977 0.45 -0.5

Or see this region's nucleotide sequence