Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1128 and SMa1131 are separated by 194 nucleotides SMa1131 and SMa1132 are separated by 428 nucleotides SMa1132 and SMa1134 are separated by 47 nucleotides
SMa1128: SMa1128 - DegP4 protease like protein, at 614,946 to 616,274
SMa1128
SMa1131: SMa1131 - Metallo-beta-lactamase superfamily protein, at 616,469 to 618,064
SMa1131
SMa1132: SMa1132 - hypothetical protein, at 618,493 to 618,882
SMa1132
SMa1134: SMa1134 - hypothetical protein, at 618,930 to 619,556
SMa1134
Position (kb) 616
617
618
619 Strain fitness (log2 ratio) -2
-1
0
1 at 615.514 kb on + strand, within SMa1128 at 615.588 kb on - strand, within SMa1128 at 615.701 kb on - strand, within SMa1128 at 615.709 kb on + strand, within SMa1128 at 615.723 kb on + strand, within SMa1128 at 615.853 kb on - strand, within SMa1128 at 615.907 kb on - strand, within SMa1128 at 615.994 kb on + strand, within SMa1128 at 615.995 kb on - strand, within SMa1128 at 615.995 kb on - strand, within SMa1128 at 615.995 kb on - strand, within SMa1128 at 616.059 kb on + strand, within SMa1128 at 616.059 kb on + strand, within SMa1128 at 616.059 kb on + strand, within SMa1128 at 616.060 kb on - strand, within SMa1128 at 616.245 kb on + strand at 616.245 kb on + strand at 616.245 kb on + strand at 616.246 kb on - strand at 616.246 kb on - strand at 616.264 kb on - strand at 616.851 kb on + strand, within SMa1131 at 616.852 kb on - strand, within SMa1131 at 616.852 kb on - strand, within SMa1131 at 616.852 kb on - strand, within SMa1131 at 616.904 kb on - strand, within SMa1131 at 616.904 kb on - strand, within SMa1131 at 616.960 kb on - strand, within SMa1131 at 617.059 kb on + strand, within SMa1131 at 617.060 kb on - strand, within SMa1131 at 617.224 kb on + strand, within SMa1131 at 617.258 kb on + strand, within SMa1131 at 617.258 kb on + strand, within SMa1131 at 617.259 kb on - strand, within SMa1131 at 617.259 kb on - strand, within SMa1131 at 617.404 kb on + strand, within SMa1131 at 617.405 kb on - strand, within SMa1131 at 617.412 kb on + strand, within SMa1131 at 617.412 kb on + strand, within SMa1131 at 617.413 kb on - strand, within SMa1131 at 617.413 kb on - strand, within SMa1131 at 617.413 kb on - strand, within SMa1131 at 617.476 kb on + strand, within SMa1131 at 617.821 kb on - strand, within SMa1131 at 617.923 kb on - strand at 618.082 kb on - strand at 618.082 kb on - strand at 618.096 kb on + strand at 618.097 kb on - strand at 618.097 kb on - strand at 618.097 kb on - strand at 618.097 kb on - strand at 618.097 kb on - strand at 618.153 kb on + strand at 618.262 kb on + strand at 618.263 kb on - strand at 618.407 kb on - strand at 618.633 kb on - strand, within SMa1132 at 618.698 kb on + strand, within SMa1132 at 618.699 kb on - strand, within SMa1132 at 618.699 kb on - strand, within SMa1132 at 618.772 kb on + strand, within SMa1132 at 618.773 kb on - strand, within SMa1132 at 618.773 kb on - strand, within SMa1132 at 618.773 kb on - strand, within SMa1132 at 618.775 kb on - strand, within SMa1132 at 618.856 kb on + strand at 618.856 kb on + strand at 618.857 kb on - strand at 618.857 kb on - strand at 618.880 kb on + strand at 618.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 615,514 + SMa1128 0.43 -0.0 615,588 - SMa1128 0.48 -1.4 615,701 - SMa1128 0.57 -1.1 615,709 + SMa1128 0.57 +0.6 615,723 + SMa1128 0.58 +0.9 615,853 - SMa1128 0.68 +0.3 615,907 - SMa1128 0.72 +0.1 615,994 + SMa1128 0.79 -0.1 615,995 - SMa1128 0.79 +0.6 615,995 - SMa1128 0.79 +0.2 615,995 - SMa1128 0.79 +0.8 616,059 + SMa1128 0.84 +0.2 616,059 + SMa1128 0.84 +1.1 616,059 + SMa1128 0.84 +1.6 616,060 - SMa1128 0.84 -0.0 616,245 + +1.6 616,245 + +0.2 616,245 + +0.2 616,246 - -0.6 616,246 - +0.3 616,264 - -0.2 616,851 + SMa1131 0.24 +0.2 616,852 - SMa1131 0.24 -1.3 616,852 - SMa1131 0.24 +0.4 616,852 - SMa1131 0.24 +1.0 616,904 - SMa1131 0.27 +0.5 616,904 - SMa1131 0.27 +0.2 616,960 - SMa1131 0.31 -0.7 617,059 + SMa1131 0.37 +0.2 617,060 - SMa1131 0.37 +0.1 617,224 + SMa1131 0.47 -0.3 617,258 + SMa1131 0.49 +0.2 617,258 + SMa1131 0.49 +0.7 617,259 - SMa1131 0.49 +0.5 617,259 - SMa1131 0.49 +1.0 617,404 + SMa1131 0.59 +0.0 617,405 - SMa1131 0.59 -0.1 617,412 + SMa1131 0.59 +0.9 617,412 + SMa1131 0.59 +0.1 617,413 - SMa1131 0.59 +0.1 617,413 - SMa1131 0.59 +0.5 617,413 - SMa1131 0.59 +0.2 617,476 + SMa1131 0.63 -0.1 617,821 - SMa1131 0.85 +0.3 617,923 - -0.3 618,082 - -0.4 618,082 - -0.1 618,096 + +1.1 618,097 - -0.4 618,097 - +0.3 618,097 - -0.2 618,097 - +1.0 618,097 - -0.4 618,153 + +0.8 618,262 + -1.3 618,263 - +0.2 618,407 - +0.1 618,633 - SMa1132 0.36 -0.1 618,698 + SMa1132 0.53 +1.2 618,699 - SMa1132 0.53 -1.0 618,699 - SMa1132 0.53 -0.3 618,772 + SMa1132 0.72 +1.2 618,773 - SMa1132 0.72 +0.4 618,773 - SMa1132 0.72 -1.0 618,773 - SMa1132 0.72 +0.2 618,775 - SMa1132 0.72 +0.2 618,856 + -0.6 618,856 + +0.4 618,857 - -2.1 618,857 - -0.1 618,880 + -0.3 618,881 - +0.2
Or see this region's nucleotide sequence