Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0787 and SMa0789 are separated by 383 nucleotides SMa0789 and SMa0791 are separated by 462 nucleotides
SMa0787: SMa0787 - transposase, fragment, at 428,239 to 429,057
SMa0787
SMa0789: SMa0789 - GntR family transcriptional regulator, at 429,441 to 430,136
SMa0789
SMa0791: SMa0791 - hypothetical protein, at 430,599 to 431,201
SMa0791
Position (kb) 429
430
431 Strain fitness (log2 ratio) -2
-1
0
1 at 428.708 kb on + strand, within SMa0787 at 428.738 kb on + strand, within SMa0787 at 428.739 kb on - strand, within SMa0787 at 428.766 kb on + strand, within SMa0787 at 429.165 kb on - strand at 429.275 kb on + strand at 429.276 kb on - strand at 429.334 kb on + strand at 429.407 kb on + strand at 429.408 kb on - strand at 429.408 kb on - strand at 429.425 kb on + strand at 429.530 kb on + strand, within SMa0789 at 429.535 kb on + strand, within SMa0789 at 429.828 kb on + strand, within SMa0789 at 429.828 kb on + strand, within SMa0789 at 429.829 kb on - strand, within SMa0789 at 429.891 kb on - strand, within SMa0789 at 429.977 kb on + strand, within SMa0789 at 430.108 kb on + strand at 430.144 kb on - strand at 430.144 kb on - strand at 430.598 kb on + strand at 430.598 kb on + strand at 430.598 kb on + strand at 430.599 kb on - strand at 430.679 kb on - strand, within SMa0791 at 430.679 kb on - strand, within SMa0791 at 430.789 kb on + strand, within SMa0791 at 430.790 kb on - strand, within SMa0791 at 430.793 kb on + strand, within SMa0791 at 430.793 kb on + strand, within SMa0791 at 430.901 kb on + strand, within SMa0791 at 430.924 kb on - strand at 430.950 kb on + strand, within SMa0791 at 430.951 kb on - strand, within SMa0791 at 430.968 kb on - strand, within SMa0791 at 431.041 kb on - strand, within SMa0791
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 428,708 + SMa0787 0.57 -0.2 428,738 + SMa0787 0.61 +0.0 428,739 - SMa0787 0.61 -0.0 428,766 + SMa0787 0.64 +0.6 429,165 - +0.1 429,275 + -0.9 429,276 - +0.7 429,334 + -0.3 429,407 + -0.1 429,408 - +0.4 429,408 - -0.1 429,425 + +0.4 429,530 + SMa0789 0.13 -0.2 429,535 + SMa0789 0.14 -2.3 429,828 + SMa0789 0.56 -1.9 429,828 + SMa0789 0.56 -1.2 429,829 - SMa0789 0.56 -0.2 429,891 - SMa0789 0.65 -0.6 429,977 + SMa0789 0.77 -2.1 430,108 + -0.4 430,144 - +0.6 430,144 - -0.4 430,598 + +0.7 430,598 + -0.1 430,598 + +0.1 430,599 - +0.4 430,679 - SMa0791 0.13 +0.1 430,679 - SMa0791 0.13 +0.6 430,789 + SMa0791 0.32 +0.9 430,790 - SMa0791 0.32 -0.1 430,793 + SMa0791 0.32 +0.2 430,793 + SMa0791 0.32 +0.2 430,901 + SMa0791 0.50 -0.4 430,924 - +0.1 430,950 + SMa0791 0.58 -1.0 430,951 - SMa0791 0.58 -0.6 430,968 - SMa0791 0.61 -0.5 431,041 - SMa0791 0.73 -0.1
Or see this region's nucleotide sequence