Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21532 and SM_b21533 are separated by 142 nucleotides SM_b21533 and SM_b21534 are separated by 79 nucleotides
SM_b21532: SM_b21532 - phosphate acetyltransferase, at 1,058,537 to 1,059,529
_b21532
SM_b21533: SM_b21533 - GntR family transcriptional regulator, at 1,059,672 to 1,060,457
_b21533
SM_b21534: SM_b21534 - dehydrogenase, at 1,060,537 to 1,063,014
_b21534
Position (kb)
1059
1060
1061 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1058.765 kb on - strand, within SM_b21532 at 1058.787 kb on - strand, within SM_b21532 at 1058.787 kb on - strand, within SM_b21532 at 1059.119 kb on + strand, within SM_b21532 at 1059.119 kb on + strand, within SM_b21532 at 1059.250 kb on + strand, within SM_b21532 at 1059.250 kb on + strand, within SM_b21532 at 1059.250 kb on + strand, within SM_b21532 at 1059.250 kb on + strand, within SM_b21532 at 1059.376 kb on + strand, within SM_b21532 at 1059.496 kb on + strand at 1059.496 kb on + strand at 1059.497 kb on - strand at 1059.777 kb on + strand, within SM_b21533 at 1059.777 kb on + strand, within SM_b21533 at 1059.778 kb on - strand, within SM_b21533 at 1059.778 kb on - strand, within SM_b21533 at 1059.778 kb on - strand, within SM_b21533 at 1060.066 kb on + strand, within SM_b21533 at 1060.067 kb on - strand, within SM_b21533 at 1060.067 kb on - strand, within SM_b21533 at 1060.067 kb on - strand, within SM_b21533 at 1060.067 kb on - strand, within SM_b21533 at 1060.106 kb on + strand, within SM_b21533 at 1060.106 kb on + strand, within SM_b21533 at 1060.106 kb on + strand, within SM_b21533 at 1060.107 kb on - strand, within SM_b21533 at 1060.107 kb on - strand, within SM_b21533 at 1060.107 kb on - strand, within SM_b21533 at 1060.299 kb on + strand, within SM_b21533 at 1060.299 kb on + strand, within SM_b21533 at 1060.299 kb on + strand, within SM_b21533 at 1060.319 kb on + strand, within SM_b21533 at 1060.504 kb on + strand at 1060.504 kb on + strand at 1060.505 kb on - strand at 1060.592 kb on + strand at 1060.592 kb on + strand at 1060.593 kb on - strand at 1060.593 kb on - strand at 1060.608 kb on + strand at 1060.609 kb on + strand at 1060.609 kb on + strand at 1060.609 kb on + strand at 1060.610 kb on - strand at 1060.610 kb on - strand at 1060.713 kb on + strand at 1060.759 kb on + strand at 1060.760 kb on - strand at 1061.052 kb on + strand, within SM_b21534 at 1061.053 kb on - strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.227 kb on + strand, within SM_b21534 at 1061.228 kb on - strand, within SM_b21534 at 1061.228 kb on - strand, within SM_b21534 at 1061.228 kb on - strand, within SM_b21534 at 1061.228 kb on - strand, within SM_b21534 at 1061.228 kb on - strand, within SM_b21534 at 1061.228 kb on - strand, within SM_b21534 at 1061.228 kb on - strand, within SM_b21534 at 1061.228 kb on - strand, within SM_b21534 at 1061.229 kb on + strand, within SM_b21534 at 1061.229 kb on + strand, within SM_b21534 at 1061.230 kb on - strand, within SM_b21534 at 1061.230 kb on - strand, within SM_b21534 at 1061.230 kb on - strand, within SM_b21534 at 1061.230 kb on - strand, within SM_b21534 at 1061.293 kb on + strand, within SM_b21534 at 1061.294 kb on - strand, within SM_b21534 at 1061.294 kb on - strand, within SM_b21534 at 1061.294 kb on - strand, within SM_b21534 at 1061.294 kb on - strand, within SM_b21534 at 1061.299 kb on + strand, within SM_b21534 at 1061.299 kb on + strand, within SM_b21534 at 1061.300 kb on - strand, within SM_b21534 at 1061.300 kb on - strand, within SM_b21534 at 1061.352 kb on + strand, within SM_b21534 at 1061.353 kb on - strand, within SM_b21534 at 1061.353 kb on - strand, within SM_b21534
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 1,058,765 - SM_b21532 0.23 +0.9 1,058,787 - SM_b21532 0.25 -1.0 1,058,787 - SM_b21532 0.25 -0.2 1,059,119 + SM_b21532 0.59 -0.3 1,059,119 + SM_b21532 0.59 -0.2 1,059,250 + SM_b21532 0.72 -0.6 1,059,250 + SM_b21532 0.72 +0.0 1,059,250 + SM_b21532 0.72 -0.4 1,059,250 + SM_b21532 0.72 -0.9 1,059,376 + SM_b21532 0.84 +0.3 1,059,496 + +0.2 1,059,496 + +1.2 1,059,497 - -0.3 1,059,777 + SM_b21533 0.13 +0.6 1,059,777 + SM_b21533 0.13 -1.1 1,059,778 - SM_b21533 0.13 -0.9 1,059,778 - SM_b21533 0.13 -0.4 1,059,778 - SM_b21533 0.13 +1.3 1,060,066 + SM_b21533 0.50 -0.1 1,060,067 - SM_b21533 0.50 +0.2 1,060,067 - SM_b21533 0.50 -0.3 1,060,067 - SM_b21533 0.50 -0.5 1,060,067 - SM_b21533 0.50 +0.1 1,060,106 + SM_b21533 0.55 +0.2 1,060,106 + SM_b21533 0.55 -1.1 1,060,106 + SM_b21533 0.55 -1.1 1,060,107 - SM_b21533 0.55 +0.5 1,060,107 - SM_b21533 0.55 +1.2 1,060,107 - SM_b21533 0.55 -0.2 1,060,299 + SM_b21533 0.80 -0.3 1,060,299 + SM_b21533 0.80 -0.3 1,060,299 + SM_b21533 0.80 -0.4 1,060,319 + SM_b21533 0.82 -0.3 1,060,504 + -2.9 1,060,504 + -0.4 1,060,505 - -0.0 1,060,592 + +0.0 1,060,592 + +0.2 1,060,593 - +0.2 1,060,593 - -0.5 1,060,608 + -0.8 1,060,609 + +0.2 1,060,609 + -0.4 1,060,609 + -0.8 1,060,610 - -0.5 1,060,610 - +0.3 1,060,713 + +0.9 1,060,759 + +1.8 1,060,760 - -0.1 1,061,052 + SM_b21534 0.21 +0.0 1,061,053 - SM_b21534 0.21 -1.4 1,061,227 + SM_b21534 0.28 -0.6 1,061,227 + SM_b21534 0.28 +1.2 1,061,227 + SM_b21534 0.28 +0.2 1,061,227 + SM_b21534 0.28 +0.1 1,061,227 + SM_b21534 0.28 -0.6 1,061,227 + SM_b21534 0.28 -0.2 1,061,227 + SM_b21534 0.28 +0.4 1,061,227 + SM_b21534 0.28 +0.4 1,061,227 + SM_b21534 0.28 +0.4 1,061,227 + SM_b21534 0.28 -0.8 1,061,227 + SM_b21534 0.28 -0.8 1,061,227 + SM_b21534 0.28 -0.4 1,061,227 + SM_b21534 0.28 +0.2 1,061,227 + SM_b21534 0.28 -0.0 1,061,227 + SM_b21534 0.28 -0.3 1,061,228 - SM_b21534 0.28 -0.0 1,061,228 - SM_b21534 0.28 +0.0 1,061,228 - SM_b21534 0.28 +0.0 1,061,228 - SM_b21534 0.28 -1.9 1,061,228 - SM_b21534 0.28 -0.5 1,061,228 - SM_b21534 0.28 -0.1 1,061,228 - SM_b21534 0.28 +0.6 1,061,228 - SM_b21534 0.28 -0.0 1,061,229 + SM_b21534 0.28 -0.2 1,061,229 + SM_b21534 0.28 +0.2 1,061,230 - SM_b21534 0.28 -0.4 1,061,230 - SM_b21534 0.28 -0.3 1,061,230 - SM_b21534 0.28 +0.0 1,061,230 - SM_b21534 0.28 -0.7 1,061,293 + SM_b21534 0.31 +0.2 1,061,294 - SM_b21534 0.31 -0.2 1,061,294 - SM_b21534 0.31 -2.0 1,061,294 - SM_b21534 0.31 +0.1 1,061,294 - SM_b21534 0.31 -0.4 1,061,299 + SM_b21534 0.31 -1.3 1,061,299 + SM_b21534 0.31 -0.6 1,061,300 - SM_b21534 0.31 -0.2 1,061,300 - SM_b21534 0.31 +0.7 1,061,352 + SM_b21534 0.33 -1.3 1,061,353 - SM_b21534 0.33 -0.7 1,061,353 - SM_b21534 0.33 -0.3
Or see this region's nucleotide sequence