Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21533

Experiment: pipercolic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21532 and SM_b21533 are separated by 142 nucleotidesSM_b21533 and SM_b21534 are separated by 79 nucleotides SM_b21532: SM_b21532 - phosphate acetyltransferase, at 1,058,537 to 1,059,529 _b21532 SM_b21533: SM_b21533 - GntR family transcriptional regulator, at 1,059,672 to 1,060,457 _b21533 SM_b21534: SM_b21534 - dehydrogenase, at 1,060,537 to 1,063,014 _b21534 Position (kb) 1059 1060 1061Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1058.765 kb on - strand, within SM_b21532at 1058.787 kb on - strand, within SM_b21532at 1058.787 kb on - strand, within SM_b21532at 1059.119 kb on + strand, within SM_b21532at 1059.119 kb on + strand, within SM_b21532at 1059.250 kb on + strand, within SM_b21532at 1059.250 kb on + strand, within SM_b21532at 1059.250 kb on + strand, within SM_b21532at 1059.250 kb on + strand, within SM_b21532at 1059.376 kb on + strand, within SM_b21532at 1059.496 kb on + strandat 1059.496 kb on + strandat 1059.497 kb on - strandat 1059.777 kb on + strand, within SM_b21533at 1059.777 kb on + strand, within SM_b21533at 1059.778 kb on - strand, within SM_b21533at 1059.778 kb on - strand, within SM_b21533at 1059.778 kb on - strand, within SM_b21533at 1060.066 kb on + strand, within SM_b21533at 1060.067 kb on - strand, within SM_b21533at 1060.067 kb on - strand, within SM_b21533at 1060.067 kb on - strand, within SM_b21533at 1060.067 kb on - strand, within SM_b21533at 1060.106 kb on + strand, within SM_b21533at 1060.106 kb on + strand, within SM_b21533at 1060.106 kb on + strand, within SM_b21533at 1060.107 kb on - strand, within SM_b21533at 1060.107 kb on - strand, within SM_b21533at 1060.107 kb on - strand, within SM_b21533at 1060.299 kb on + strand, within SM_b21533at 1060.299 kb on + strand, within SM_b21533at 1060.299 kb on + strand, within SM_b21533at 1060.319 kb on + strand, within SM_b21533at 1060.504 kb on + strandat 1060.504 kb on + strandat 1060.505 kb on - strandat 1060.592 kb on + strandat 1060.592 kb on + strandat 1060.593 kb on - strandat 1060.593 kb on - strandat 1060.608 kb on + strandat 1060.609 kb on + strandat 1060.609 kb on + strandat 1060.609 kb on + strandat 1060.610 kb on - strandat 1060.610 kb on - strandat 1060.713 kb on + strandat 1060.759 kb on + strandat 1060.760 kb on - strandat 1061.052 kb on + strand, within SM_b21534at 1061.053 kb on - strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.227 kb on + strand, within SM_b21534at 1061.228 kb on - strand, within SM_b21534at 1061.228 kb on - strand, within SM_b21534at 1061.228 kb on - strand, within SM_b21534at 1061.228 kb on - strand, within SM_b21534at 1061.228 kb on - strand, within SM_b21534at 1061.228 kb on - strand, within SM_b21534at 1061.228 kb on - strand, within SM_b21534at 1061.228 kb on - strand, within SM_b21534at 1061.229 kb on + strand, within SM_b21534at 1061.229 kb on + strand, within SM_b21534at 1061.230 kb on - strand, within SM_b21534at 1061.230 kb on - strand, within SM_b21534at 1061.230 kb on - strand, within SM_b21534at 1061.230 kb on - strand, within SM_b21534at 1061.293 kb on + strand, within SM_b21534at 1061.294 kb on - strand, within SM_b21534at 1061.294 kb on - strand, within SM_b21534at 1061.294 kb on - strand, within SM_b21534at 1061.294 kb on - strand, within SM_b21534at 1061.299 kb on + strand, within SM_b21534at 1061.299 kb on + strand, within SM_b21534at 1061.300 kb on - strand, within SM_b21534at 1061.300 kb on - strand, within SM_b21534at 1061.352 kb on + strand, within SM_b21534at 1061.353 kb on - strand, within SM_b21534at 1061.353 kb on - strand, within SM_b21534

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Per-strain Table

Position Strand Gene LocusTag Fraction pipercolic (C)
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1,058,765 - SM_b21532 0.23 +0.9
1,058,787 - SM_b21532 0.25 -1.0
1,058,787 - SM_b21532 0.25 -0.2
1,059,119 + SM_b21532 0.59 -0.3
1,059,119 + SM_b21532 0.59 -0.2
1,059,250 + SM_b21532 0.72 -0.6
1,059,250 + SM_b21532 0.72 +0.0
1,059,250 + SM_b21532 0.72 -0.4
1,059,250 + SM_b21532 0.72 -0.9
1,059,376 + SM_b21532 0.84 +0.3
1,059,496 + +0.2
1,059,496 + +1.2
1,059,497 - -0.3
1,059,777 + SM_b21533 0.13 +0.6
1,059,777 + SM_b21533 0.13 -1.1
1,059,778 - SM_b21533 0.13 -0.9
1,059,778 - SM_b21533 0.13 -0.4
1,059,778 - SM_b21533 0.13 +1.3
1,060,066 + SM_b21533 0.50 -0.1
1,060,067 - SM_b21533 0.50 +0.2
1,060,067 - SM_b21533 0.50 -0.3
1,060,067 - SM_b21533 0.50 -0.5
1,060,067 - SM_b21533 0.50 +0.1
1,060,106 + SM_b21533 0.55 +0.2
1,060,106 + SM_b21533 0.55 -1.1
1,060,106 + SM_b21533 0.55 -1.1
1,060,107 - SM_b21533 0.55 +0.5
1,060,107 - SM_b21533 0.55 +1.2
1,060,107 - SM_b21533 0.55 -0.2
1,060,299 + SM_b21533 0.80 -0.3
1,060,299 + SM_b21533 0.80 -0.3
1,060,299 + SM_b21533 0.80 -0.4
1,060,319 + SM_b21533 0.82 -0.3
1,060,504 + -2.9
1,060,504 + -0.4
1,060,505 - -0.0
1,060,592 + +0.0
1,060,592 + +0.2
1,060,593 - +0.2
1,060,593 - -0.5
1,060,608 + -0.8
1,060,609 + +0.2
1,060,609 + -0.4
1,060,609 + -0.8
1,060,610 - -0.5
1,060,610 - +0.3
1,060,713 + +0.9
1,060,759 + +1.8
1,060,760 - -0.1
1,061,052 + SM_b21534 0.21 +0.0
1,061,053 - SM_b21534 0.21 -1.4
1,061,227 + SM_b21534 0.28 -0.6
1,061,227 + SM_b21534 0.28 +1.2
1,061,227 + SM_b21534 0.28 +0.2
1,061,227 + SM_b21534 0.28 +0.1
1,061,227 + SM_b21534 0.28 -0.6
1,061,227 + SM_b21534 0.28 -0.2
1,061,227 + SM_b21534 0.28 +0.4
1,061,227 + SM_b21534 0.28 +0.4
1,061,227 + SM_b21534 0.28 +0.4
1,061,227 + SM_b21534 0.28 -0.8
1,061,227 + SM_b21534 0.28 -0.8
1,061,227 + SM_b21534 0.28 -0.4
1,061,227 + SM_b21534 0.28 +0.2
1,061,227 + SM_b21534 0.28 -0.0
1,061,227 + SM_b21534 0.28 -0.3
1,061,228 - SM_b21534 0.28 -0.0
1,061,228 - SM_b21534 0.28 +0.0
1,061,228 - SM_b21534 0.28 +0.0
1,061,228 - SM_b21534 0.28 -1.9
1,061,228 - SM_b21534 0.28 -0.5
1,061,228 - SM_b21534 0.28 -0.1
1,061,228 - SM_b21534 0.28 +0.6
1,061,228 - SM_b21534 0.28 -0.0
1,061,229 + SM_b21534 0.28 -0.2
1,061,229 + SM_b21534 0.28 +0.2
1,061,230 - SM_b21534 0.28 -0.4
1,061,230 - SM_b21534 0.28 -0.3
1,061,230 - SM_b21534 0.28 +0.0
1,061,230 - SM_b21534 0.28 -0.7
1,061,293 + SM_b21534 0.31 +0.2
1,061,294 - SM_b21534 0.31 -0.2
1,061,294 - SM_b21534 0.31 -2.0
1,061,294 - SM_b21534 0.31 +0.1
1,061,294 - SM_b21534 0.31 -0.4
1,061,299 + SM_b21534 0.31 -1.3
1,061,299 + SM_b21534 0.31 -0.6
1,061,300 - SM_b21534 0.31 -0.2
1,061,300 - SM_b21534 0.31 +0.7
1,061,352 + SM_b21534 0.33 -1.3
1,061,353 - SM_b21534 0.33 -0.7
1,061,353 - SM_b21534 0.33 -0.3

Or see this region's nucleotide sequence