Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21361

Experiment: pipercolic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21358 and SM_b21359 are separated by 141 nucleotidesSM_b21359 and SM_b21360 overlap by 134 nucleotidesSM_b21360 and SM_b21361 are separated by 65 nucleotidesSM_b21361 and SM_b21362 are separated by 123 nucleotidesSM_b21362 and SM_b21668 are separated by 140 nucleotidesSM_b21668 and SM_b21363 are separated by 57 nucleotides SM_b21358: SM_b21358 - hypothetical protein, at 1,023,838 to 1,024,332 _b21358 SM_b21359: SM_b21359 - LysR family transcriptional regulator, at 1,024,474 to 1,024,932 _b21359 SM_b21360: SM_b21360 - LysR family transcriptional regulator, at 1,024,799 to 1,024,981 _b21360 SM_b21361: SM_b21361 - hypothetical protein, at 1,025,047 to 1,025,547 _b21361 SM_b21362: SM_b21362 - hypothetical protein, at 1,025,671 to 1,026,111 _b21362 SM_b21668: SM_b21668 - hypothetical protein, at 1,026,252 to 1,026,479 _b21668 SM_b21363: SM_b21363 - hypothetical protein, at 1,026,537 to 1,027,631 _b21363 Position (kb) 1025 1026Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1024.047 kb on - strand, within SM_b21358at 1024.047 kb on - strandat 1024.047 kb on - strand, within SM_b21358at 1024.231 kb on - strand, within SM_b21358at 1024.345 kb on - strandat 1024.453 kb on + strandat 1024.453 kb on + strandat 1024.461 kb on + strandat 1024.462 kb on - strandat 1024.467 kb on + strandat 1024.468 kb on - strandat 1024.468 kb on - strandat 1024.496 kb on - strandat 1024.496 kb on - strandat 1024.496 kb on - strandat 1024.498 kb on + strandat 1024.498 kb on + strandat 1024.499 kb on - strandat 1024.499 kb on - strandat 1024.499 kb on - strandat 1024.528 kb on + strand, within SM_b21359at 1024.529 kb on - strand, within SM_b21359at 1024.619 kb on + strand, within SM_b21359at 1024.620 kb on - strand, within SM_b21359at 1024.667 kb on - strand, within SM_b21359at 1025.021 kb on - strandat 1025.021 kb on - strandat 1025.123 kb on + strand, within SM_b21361at 1025.124 kb on - strand, within SM_b21361at 1025.124 kb on - strand, within SM_b21361at 1025.408 kb on + strand, within SM_b21361at 1025.409 kb on - strand, within SM_b21361at 1025.409 kb on - strand, within SM_b21361at 1025.409 kb on - strand, within SM_b21361at 1025.409 kb on - strand, within SM_b21361at 1025.409 kb on - strand, within SM_b21361at 1025.495 kb on + strand, within SM_b21361at 1025.595 kb on + strandat 1025.665 kb on + strandat 1025.665 kb on + strandat 1025.665 kb on + strandat 1025.666 kb on - strandat 1025.694 kb on + strandat 1025.695 kb on - strandat 1025.702 kb on - strandat 1025.702 kb on - strandat 1025.706 kb on + strandat 1025.891 kb on - strand, within SM_b21362at 1026.011 kb on + strand, within SM_b21362at 1026.011 kb on + strand, within SM_b21362at 1026.011 kb on + strand, within SM_b21362at 1026.011 kb on + strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.012 kb on - strand, within SM_b21362at 1026.092 kb on + strandat 1026.092 kb on + strandat 1026.092 kb on + strandat 1026.092 kb on + strandat 1026.093 kb on - strandat 1026.093 kb on - strandat 1026.093 kb on - strandat 1026.093 kb on - strandat 1026.102 kb on - strandat 1026.151 kb on + strandat 1026.151 kb on + strandat 1026.152 kb on - strandat 1026.152 kb on - strandat 1026.155 kb on - strandat 1026.260 kb on + strandat 1026.344 kb on + strand, within SM_b21668at 1026.345 kb on - strandat 1026.345 kb on - strand, within SM_b21668at 1026.368 kb on + strand, within SM_b21668at 1026.368 kb on - strand, within SM_b21668at 1026.368 kb on - strand, within SM_b21668at 1026.391 kb on - strand, within SM_b21668at 1026.436 kb on + strand, within SM_b21668at 1026.436 kb on + strand, within SM_b21668at 1026.486 kb on - strandat 1026.502 kb on + strandat 1026.502 kb on + strandat 1026.502 kb on + strandat 1026.502 kb on + strandat 1026.502 kb on + strandat 1026.502 kb on + strandat 1026.502 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pipercolic (C)
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1,024,047 - SM_b21358 0.42 +0.2
1,024,047 - -0.1
1,024,047 - SM_b21358 0.42 +0.1
1,024,231 - SM_b21358 0.79 -0.3
1,024,345 - -1.1
1,024,453 + -1.0
1,024,453 + +0.0
1,024,461 + -0.2
1,024,462 - -0.0
1,024,467 + +0.0
1,024,468 - -1.4
1,024,468 - +0.2
1,024,496 - -0.0
1,024,496 - -0.7
1,024,496 - +0.8
1,024,498 + -0.3
1,024,498 + +0.0
1,024,499 - +0.6
1,024,499 - -0.3
1,024,499 - -0.8
1,024,528 + SM_b21359 0.12 -0.4
1,024,529 - SM_b21359 0.12 -0.3
1,024,619 + SM_b21359 0.32 -0.2
1,024,620 - SM_b21359 0.32 +1.2
1,024,667 - SM_b21359 0.42 +0.2
1,025,021 - -0.3
1,025,021 - -0.2
1,025,123 + SM_b21361 0.15 +0.6
1,025,124 - SM_b21361 0.15 -0.6
1,025,124 - SM_b21361 0.15 -0.1
1,025,408 + SM_b21361 0.72 +0.1
1,025,409 - SM_b21361 0.72 +0.5
1,025,409 - SM_b21361 0.72 -1.0
1,025,409 - SM_b21361 0.72 -0.7
1,025,409 - SM_b21361 0.72 -0.2
1,025,409 - SM_b21361 0.72 +0.4
1,025,495 + SM_b21361 0.89 +0.2
1,025,595 + -2.0
1,025,665 + -1.0
1,025,665 + -0.3
1,025,665 + -0.8
1,025,666 - -0.7
1,025,694 + -0.1
1,025,695 - -0.7
1,025,702 - +0.0
1,025,702 - -0.4
1,025,706 + +0.8
1,025,891 - SM_b21362 0.50 -0.4
1,026,011 + SM_b21362 0.77 -0.2
1,026,011 + SM_b21362 0.77 -0.7
1,026,011 + SM_b21362 0.77 -0.1
1,026,011 + SM_b21362 0.77 -0.1
1,026,012 - SM_b21362 0.77 -4.0
1,026,012 - SM_b21362 0.77 -1.2
1,026,012 - SM_b21362 0.77 +0.3
1,026,012 - SM_b21362 0.77 +0.4
1,026,012 - SM_b21362 0.77 -0.2
1,026,012 - SM_b21362 0.77 +0.5
1,026,092 + -0.6
1,026,092 + +0.1
1,026,092 + +0.1
1,026,092 + +0.8
1,026,093 - -0.4
1,026,093 - -0.1
1,026,093 - -0.2
1,026,093 - +0.2
1,026,102 - -0.2
1,026,151 + -0.4
1,026,151 + -1.0
1,026,152 - +0.1
1,026,152 - -0.2
1,026,155 - -0.5
1,026,260 + -1.2
1,026,344 + SM_b21668 0.40 -0.5
1,026,345 - +0.2
1,026,345 - SM_b21668 0.41 -0.7
1,026,368 + SM_b21668 0.51 -0.5
1,026,368 - SM_b21668 0.51 -1.9
1,026,368 - SM_b21668 0.51 -1.0
1,026,391 - SM_b21668 0.61 -0.5
1,026,436 + SM_b21668 0.81 -0.5
1,026,436 + SM_b21668 0.81 -0.5
1,026,486 - -0.4
1,026,502 + +1.0
1,026,502 + -0.6
1,026,502 + -0.4
1,026,502 + +0.8
1,026,502 + -0.0
1,026,502 + -0.1
1,026,502 + -1.0

Or see this region's nucleotide sequence