Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21358 and SM_b21359 are separated by 141 nucleotides SM_b21359 and SM_b21360 overlap by 134 nucleotides SM_b21360 and SM_b21361 are separated by 65 nucleotides SM_b21361 and SM_b21362 are separated by 123 nucleotides SM_b21362 and SM_b21668 are separated by 140 nucleotides SM_b21668 and SM_b21363 are separated by 57 nucleotides
SM_b21358: SM_b21358 - hypothetical protein, at 1,023,838 to 1,024,332
_b21358
SM_b21359: SM_b21359 - LysR family transcriptional regulator, at 1,024,474 to 1,024,932
_b21359
SM_b21360: SM_b21360 - LysR family transcriptional regulator, at 1,024,799 to 1,024,981
_b21360
SM_b21361: SM_b21361 - hypothetical protein, at 1,025,047 to 1,025,547
_b21361
SM_b21362: SM_b21362 - hypothetical protein, at 1,025,671 to 1,026,111
_b21362
SM_b21668: SM_b21668 - hypothetical protein, at 1,026,252 to 1,026,479
_b21668
SM_b21363: SM_b21363 - hypothetical protein, at 1,026,537 to 1,027,631
_b21363
Position (kb)
1025
1026 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1024.047 kb on - strand, within SM_b21358 at 1024.047 kb on - strand at 1024.047 kb on - strand, within SM_b21358 at 1024.231 kb on - strand, within SM_b21358 at 1024.345 kb on - strand at 1024.453 kb on + strand at 1024.453 kb on + strand at 1024.461 kb on + strand at 1024.462 kb on - strand at 1024.467 kb on + strand at 1024.468 kb on - strand at 1024.468 kb on - strand at 1024.496 kb on - strand at 1024.496 kb on - strand at 1024.496 kb on - strand at 1024.498 kb on + strand at 1024.498 kb on + strand at 1024.499 kb on - strand at 1024.499 kb on - strand at 1024.499 kb on - strand at 1024.528 kb on + strand, within SM_b21359 at 1024.529 kb on - strand, within SM_b21359 at 1024.619 kb on + strand, within SM_b21359 at 1024.620 kb on - strand, within SM_b21359 at 1024.667 kb on - strand, within SM_b21359 at 1025.021 kb on - strand at 1025.021 kb on - strand at 1025.123 kb on + strand, within SM_b21361 at 1025.124 kb on - strand, within SM_b21361 at 1025.124 kb on - strand, within SM_b21361 at 1025.408 kb on + strand, within SM_b21361 at 1025.409 kb on - strand, within SM_b21361 at 1025.409 kb on - strand, within SM_b21361 at 1025.409 kb on - strand, within SM_b21361 at 1025.409 kb on - strand, within SM_b21361 at 1025.409 kb on - strand, within SM_b21361 at 1025.495 kb on + strand, within SM_b21361 at 1025.595 kb on + strand at 1025.665 kb on + strand at 1025.665 kb on + strand at 1025.665 kb on + strand at 1025.666 kb on - strand at 1025.694 kb on + strand at 1025.695 kb on - strand at 1025.702 kb on - strand at 1025.702 kb on - strand at 1025.706 kb on + strand at 1025.891 kb on - strand, within SM_b21362 at 1026.011 kb on + strand, within SM_b21362 at 1026.011 kb on + strand, within SM_b21362 at 1026.011 kb on + strand, within SM_b21362 at 1026.011 kb on + strand, within SM_b21362 at 1026.012 kb on - strand, within SM_b21362 at 1026.012 kb on - strand, within SM_b21362 at 1026.012 kb on - strand, within SM_b21362 at 1026.012 kb on - strand, within SM_b21362 at 1026.012 kb on - strand, within SM_b21362 at 1026.012 kb on - strand, within SM_b21362 at 1026.092 kb on + strand at 1026.092 kb on + strand at 1026.092 kb on + strand at 1026.092 kb on + strand at 1026.093 kb on - strand at 1026.093 kb on - strand at 1026.093 kb on - strand at 1026.093 kb on - strand at 1026.102 kb on - strand at 1026.151 kb on + strand at 1026.151 kb on + strand at 1026.152 kb on - strand at 1026.152 kb on - strand at 1026.155 kb on - strand at 1026.260 kb on + strand at 1026.344 kb on + strand, within SM_b21668 at 1026.345 kb on - strand at 1026.345 kb on - strand, within SM_b21668 at 1026.368 kb on + strand, within SM_b21668 at 1026.368 kb on - strand, within SM_b21668 at 1026.368 kb on - strand, within SM_b21668 at 1026.391 kb on - strand, within SM_b21668 at 1026.436 kb on + strand, within SM_b21668 at 1026.436 kb on + strand, within SM_b21668 at 1026.486 kb on - strand at 1026.502 kb on + strand at 1026.502 kb on + strand at 1026.502 kb on + strand at 1026.502 kb on + strand at 1026.502 kb on + strand at 1026.502 kb on + strand at 1026.502 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 1,024,047 - SM_b21358 0.42 +0.2 1,024,047 - -0.1 1,024,047 - SM_b21358 0.42 +0.1 1,024,231 - SM_b21358 0.79 -0.3 1,024,345 - -1.1 1,024,453 + -1.0 1,024,453 + +0.0 1,024,461 + -0.2 1,024,462 - -0.0 1,024,467 + +0.0 1,024,468 - -1.4 1,024,468 - +0.2 1,024,496 - -0.0 1,024,496 - -0.7 1,024,496 - +0.8 1,024,498 + -0.3 1,024,498 + +0.0 1,024,499 - +0.6 1,024,499 - -0.3 1,024,499 - -0.8 1,024,528 + SM_b21359 0.12 -0.4 1,024,529 - SM_b21359 0.12 -0.3 1,024,619 + SM_b21359 0.32 -0.2 1,024,620 - SM_b21359 0.32 +1.2 1,024,667 - SM_b21359 0.42 +0.2 1,025,021 - -0.3 1,025,021 - -0.2 1,025,123 + SM_b21361 0.15 +0.6 1,025,124 - SM_b21361 0.15 -0.6 1,025,124 - SM_b21361 0.15 -0.1 1,025,408 + SM_b21361 0.72 +0.1 1,025,409 - SM_b21361 0.72 +0.5 1,025,409 - SM_b21361 0.72 -1.0 1,025,409 - SM_b21361 0.72 -0.7 1,025,409 - SM_b21361 0.72 -0.2 1,025,409 - SM_b21361 0.72 +0.4 1,025,495 + SM_b21361 0.89 +0.2 1,025,595 + -2.0 1,025,665 + -1.0 1,025,665 + -0.3 1,025,665 + -0.8 1,025,666 - -0.7 1,025,694 + -0.1 1,025,695 - -0.7 1,025,702 - +0.0 1,025,702 - -0.4 1,025,706 + +0.8 1,025,891 - SM_b21362 0.50 -0.4 1,026,011 + SM_b21362 0.77 -0.2 1,026,011 + SM_b21362 0.77 -0.7 1,026,011 + SM_b21362 0.77 -0.1 1,026,011 + SM_b21362 0.77 -0.1 1,026,012 - SM_b21362 0.77 -4.0 1,026,012 - SM_b21362 0.77 -1.2 1,026,012 - SM_b21362 0.77 +0.3 1,026,012 - SM_b21362 0.77 +0.4 1,026,012 - SM_b21362 0.77 -0.2 1,026,012 - SM_b21362 0.77 +0.5 1,026,092 + -0.6 1,026,092 + +0.1 1,026,092 + +0.1 1,026,092 + +0.8 1,026,093 - -0.4 1,026,093 - -0.1 1,026,093 - -0.2 1,026,093 - +0.2 1,026,102 - -0.2 1,026,151 + -0.4 1,026,151 + -1.0 1,026,152 - +0.1 1,026,152 - -0.2 1,026,155 - -0.5 1,026,260 + -1.2 1,026,344 + SM_b21668 0.40 -0.5 1,026,345 - +0.2 1,026,345 - SM_b21668 0.41 -0.7 1,026,368 + SM_b21668 0.51 -0.5 1,026,368 - SM_b21668 0.51 -1.9 1,026,368 - SM_b21668 0.51 -1.0 1,026,391 - SM_b21668 0.61 -0.5 1,026,436 + SM_b21668 0.81 -0.5 1,026,436 + SM_b21668 0.81 -0.5 1,026,486 - -0.4 1,026,502 + +1.0 1,026,502 + -0.6 1,026,502 + -0.4 1,026,502 + +0.8 1,026,502 + -0.0 1,026,502 + -0.1 1,026,502 + -1.0
Or see this region's nucleotide sequence