Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21344

Experiment: pipercolic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21343 and SM_b21344 are separated by 1 nucleotidesSM_b21344 and SM_b21345 are separated by 99 nucleotides SM_b21343: SM_b21343 - sugar uptake ABC transporter permease, at 1,008,768 to 1,009,772 _b21343 SM_b21344: SM_b21344 - sugar uptake ABC transporter ATP-binding protein, at 1,009,774 to 1,011,267 _b21344 SM_b21345: SM_b21345 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,011,367 to 1,012,350 _b21345 Position (kb) 1009 1010 1011 1012Strain fitness (log2 ratio) -2 -1 0 1 2at 1008.872 kb on - strand, within SM_b21343at 1009.072 kb on + strand, within SM_b21343at 1009.072 kb on + strand, within SM_b21343at 1009.072 kb on + strand, within SM_b21343at 1009.073 kb on - strand, within SM_b21343at 1009.101 kb on + strand, within SM_b21343at 1009.697 kb on - strandat 1009.775 kb on + strandat 1009.776 kb on - strandat 1009.776 kb on - strandat 1010.089 kb on - strand, within SM_b21344at 1010.089 kb on - strand, within SM_b21344at 1010.089 kb on - strand, within SM_b21344at 1010.132 kb on + strand, within SM_b21344at 1010.133 kb on - strand, within SM_b21344at 1010.133 kb on - strand, within SM_b21344at 1010.241 kb on + strand, within SM_b21344at 1010.331 kb on - strand, within SM_b21344at 1010.568 kb on + strand, within SM_b21344at 1010.569 kb on - strand, within SM_b21344at 1010.725 kb on + strand, within SM_b21344at 1010.726 kb on - strand, within SM_b21344at 1010.726 kb on - strand, within SM_b21344at 1010.972 kb on + strand, within SM_b21344at 1010.972 kb on + strand, within SM_b21344at 1010.972 kb on + strand, within SM_b21344at 1010.972 kb on + strand, within SM_b21344at 1010.973 kb on - strand, within SM_b21344at 1010.973 kb on - strand, within SM_b21344at 1010.973 kb on - strand, within SM_b21344at 1010.973 kb on - strand, within SM_b21344at 1011.020 kb on + strand, within SM_b21344at 1011.020 kb on + strand, within SM_b21344at 1011.021 kb on - strand, within SM_b21344at 1011.070 kb on + strand, within SM_b21344at 1011.071 kb on - strand, within SM_b21344at 1011.267 kb on + strandat 1011.267 kb on + strandat 1011.267 kb on + strandat 1011.268 kb on - strandat 1011.268 kb on - strandat 1011.268 kb on - strandat 1011.268 kb on - strandat 1011.295 kb on - strandat 1011.411 kb on - strandat 1011.411 kb on - strandat 1011.427 kb on + strandat 1011.428 kb on - strandat 1011.616 kb on + strand, within SM_b21345at 1011.616 kb on + strand, within SM_b21345at 1011.617 kb on - strand, within SM_b21345at 1011.659 kb on + strand, within SM_b21345at 1011.932 kb on + strand, within SM_b21345at 1011.932 kb on + strand, within SM_b21345at 1011.932 kb on + strand, within SM_b21345at 1012.131 kb on + strand, within SM_b21345at 1012.131 kb on + strand, within SM_b21345at 1012.132 kb on - strand, within SM_b21345at 1012.132 kb on - strand, within SM_b21345at 1012.133 kb on + strand, within SM_b21345at 1012.133 kb on + strand, within SM_b21345at 1012.234 kb on - strand, within SM_b21345at 1012.234 kb on - strand, within SM_b21345at 1012.235 kb on + strand, within SM_b21345at 1012.235 kb on + strand, within SM_b21345at 1012.236 kb on - strand, within SM_b21345at 1012.236 kb on - strand, within SM_b21345

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Per-strain Table

Position Strand Gene LocusTag Fraction pipercolic (C)
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1,008,872 - SM_b21343 0.10 +1.2
1,009,072 + SM_b21343 0.30 -0.4
1,009,072 + SM_b21343 0.30 +0.2
1,009,072 + SM_b21343 0.30 +0.5
1,009,073 - SM_b21343 0.30 -1.7
1,009,101 + SM_b21343 0.33 +0.9
1,009,697 - -0.6
1,009,775 + +0.9
1,009,776 - -0.1
1,009,776 - -1.8
1,010,089 - SM_b21344 0.21 -0.2
1,010,089 - SM_b21344 0.21 +0.2
1,010,089 - SM_b21344 0.21 -0.6
1,010,132 + SM_b21344 0.24 +2.0
1,010,133 - SM_b21344 0.24 -0.0
1,010,133 - SM_b21344 0.24 -2.0
1,010,241 + SM_b21344 0.31 +0.6
1,010,331 - SM_b21344 0.37 -0.8
1,010,568 + SM_b21344 0.53 +0.0
1,010,569 - SM_b21344 0.53 +0.0
1,010,725 + SM_b21344 0.64 +2.1
1,010,726 - SM_b21344 0.64 -0.2
1,010,726 - SM_b21344 0.64 +0.1
1,010,972 + SM_b21344 0.80 -0.3
1,010,972 + SM_b21344 0.80 +0.0
1,010,972 + SM_b21344 0.80 -0.2
1,010,972 + SM_b21344 0.80 +0.2
1,010,973 - SM_b21344 0.80 -0.7
1,010,973 - SM_b21344 0.80 -0.5
1,010,973 - SM_b21344 0.80 -0.8
1,010,973 - SM_b21344 0.80 -0.4
1,011,020 + SM_b21344 0.83 -0.6
1,011,020 + SM_b21344 0.83 -1.4
1,011,021 - SM_b21344 0.83 -2.0
1,011,070 + SM_b21344 0.87 -0.6
1,011,071 - SM_b21344 0.87 +0.4
1,011,267 + -0.3
1,011,267 + +1.1
1,011,267 + +0.1
1,011,268 - +0.1
1,011,268 - -0.3
1,011,268 - -1.1
1,011,268 - -0.4
1,011,295 - +0.2
1,011,411 - +0.2
1,011,411 - -0.3
1,011,427 + -1.5
1,011,428 - -0.4
1,011,616 + SM_b21345 0.25 -0.8
1,011,616 + SM_b21345 0.25 -0.2
1,011,617 - SM_b21345 0.25 +0.1
1,011,659 + SM_b21345 0.30 -0.4
1,011,932 + SM_b21345 0.57 -0.3
1,011,932 + SM_b21345 0.57 -0.2
1,011,932 + SM_b21345 0.57 -0.1
1,012,131 + SM_b21345 0.78 -1.1
1,012,131 + SM_b21345 0.78 -1.0
1,012,132 - SM_b21345 0.78 -1.0
1,012,132 - SM_b21345 0.78 +0.6
1,012,133 + SM_b21345 0.78 +1.2
1,012,133 + SM_b21345 0.78 +2.2
1,012,234 - SM_b21345 0.88 -1.0
1,012,234 - SM_b21345 0.88 -0.9
1,012,235 + SM_b21345 0.88 +0.2
1,012,235 + SM_b21345 0.88 +0.8
1,012,236 - SM_b21345 0.88 -0.4
1,012,236 - SM_b21345 0.88 -0.2

Or see this region's nucleotide sequence