Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21343 and SM_b21344 are separated by 1 nucleotides SM_b21344 and SM_b21345 are separated by 99 nucleotides
SM_b21343: SM_b21343 - sugar uptake ABC transporter permease, at 1,008,768 to 1,009,772
_b21343
SM_b21344: SM_b21344 - sugar uptake ABC transporter ATP-binding protein, at 1,009,774 to 1,011,267
_b21344
SM_b21345: SM_b21345 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,011,367 to 1,012,350
_b21345
Position (kb)
1009
1010
1011
1012 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1008.872 kb on - strand, within SM_b21343 at 1009.072 kb on + strand, within SM_b21343 at 1009.072 kb on + strand, within SM_b21343 at 1009.072 kb on + strand, within SM_b21343 at 1009.073 kb on - strand, within SM_b21343 at 1009.101 kb on + strand, within SM_b21343 at 1009.697 kb on - strand at 1009.775 kb on + strand at 1009.776 kb on - strand at 1009.776 kb on - strand at 1010.089 kb on - strand, within SM_b21344 at 1010.089 kb on - strand, within SM_b21344 at 1010.089 kb on - strand, within SM_b21344 at 1010.132 kb on + strand, within SM_b21344 at 1010.133 kb on - strand, within SM_b21344 at 1010.133 kb on - strand, within SM_b21344 at 1010.241 kb on + strand, within SM_b21344 at 1010.331 kb on - strand, within SM_b21344 at 1010.568 kb on + strand, within SM_b21344 at 1010.569 kb on - strand, within SM_b21344 at 1010.725 kb on + strand, within SM_b21344 at 1010.726 kb on - strand, within SM_b21344 at 1010.726 kb on - strand, within SM_b21344 at 1010.972 kb on + strand, within SM_b21344 at 1010.972 kb on + strand, within SM_b21344 at 1010.972 kb on + strand, within SM_b21344 at 1010.972 kb on + strand, within SM_b21344 at 1010.973 kb on - strand, within SM_b21344 at 1010.973 kb on - strand, within SM_b21344 at 1010.973 kb on - strand, within SM_b21344 at 1010.973 kb on - strand, within SM_b21344 at 1011.020 kb on + strand, within SM_b21344 at 1011.020 kb on + strand, within SM_b21344 at 1011.021 kb on - strand, within SM_b21344 at 1011.070 kb on + strand, within SM_b21344 at 1011.071 kb on - strand, within SM_b21344 at 1011.267 kb on + strand at 1011.267 kb on + strand at 1011.267 kb on + strand at 1011.268 kb on - strand at 1011.268 kb on - strand at 1011.268 kb on - strand at 1011.268 kb on - strand at 1011.295 kb on - strand at 1011.411 kb on - strand at 1011.411 kb on - strand at 1011.427 kb on + strand at 1011.428 kb on - strand at 1011.616 kb on + strand, within SM_b21345 at 1011.616 kb on + strand, within SM_b21345 at 1011.617 kb on - strand, within SM_b21345 at 1011.659 kb on + strand, within SM_b21345 at 1011.932 kb on + strand, within SM_b21345 at 1011.932 kb on + strand, within SM_b21345 at 1011.932 kb on + strand, within SM_b21345 at 1012.131 kb on + strand, within SM_b21345 at 1012.131 kb on + strand, within SM_b21345 at 1012.132 kb on - strand, within SM_b21345 at 1012.132 kb on - strand, within SM_b21345 at 1012.133 kb on + strand, within SM_b21345 at 1012.133 kb on + strand, within SM_b21345 at 1012.234 kb on - strand, within SM_b21345 at 1012.234 kb on - strand, within SM_b21345 at 1012.235 kb on + strand, within SM_b21345 at 1012.235 kb on + strand, within SM_b21345 at 1012.236 kb on - strand, within SM_b21345 at 1012.236 kb on - strand, within SM_b21345
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 1,008,872 - SM_b21343 0.10 +1.2 1,009,072 + SM_b21343 0.30 -0.4 1,009,072 + SM_b21343 0.30 +0.2 1,009,072 + SM_b21343 0.30 +0.5 1,009,073 - SM_b21343 0.30 -1.7 1,009,101 + SM_b21343 0.33 +0.9 1,009,697 - -0.6 1,009,775 + +0.9 1,009,776 - -0.1 1,009,776 - -1.8 1,010,089 - SM_b21344 0.21 -0.2 1,010,089 - SM_b21344 0.21 +0.2 1,010,089 - SM_b21344 0.21 -0.6 1,010,132 + SM_b21344 0.24 +2.0 1,010,133 - SM_b21344 0.24 -0.0 1,010,133 - SM_b21344 0.24 -2.0 1,010,241 + SM_b21344 0.31 +0.6 1,010,331 - SM_b21344 0.37 -0.8 1,010,568 + SM_b21344 0.53 +0.0 1,010,569 - SM_b21344 0.53 +0.0 1,010,725 + SM_b21344 0.64 +2.1 1,010,726 - SM_b21344 0.64 -0.2 1,010,726 - SM_b21344 0.64 +0.1 1,010,972 + SM_b21344 0.80 -0.3 1,010,972 + SM_b21344 0.80 +0.0 1,010,972 + SM_b21344 0.80 -0.2 1,010,972 + SM_b21344 0.80 +0.2 1,010,973 - SM_b21344 0.80 -0.7 1,010,973 - SM_b21344 0.80 -0.5 1,010,973 - SM_b21344 0.80 -0.8 1,010,973 - SM_b21344 0.80 -0.4 1,011,020 + SM_b21344 0.83 -0.6 1,011,020 + SM_b21344 0.83 -1.4 1,011,021 - SM_b21344 0.83 -2.0 1,011,070 + SM_b21344 0.87 -0.6 1,011,071 - SM_b21344 0.87 +0.4 1,011,267 + -0.3 1,011,267 + +1.1 1,011,267 + +0.1 1,011,268 - +0.1 1,011,268 - -0.3 1,011,268 - -1.1 1,011,268 - -0.4 1,011,295 - +0.2 1,011,411 - +0.2 1,011,411 - -0.3 1,011,427 + -1.5 1,011,428 - -0.4 1,011,616 + SM_b21345 0.25 -0.8 1,011,616 + SM_b21345 0.25 -0.2 1,011,617 - SM_b21345 0.25 +0.1 1,011,659 + SM_b21345 0.30 -0.4 1,011,932 + SM_b21345 0.57 -0.3 1,011,932 + SM_b21345 0.57 -0.2 1,011,932 + SM_b21345 0.57 -0.1 1,012,131 + SM_b21345 0.78 -1.1 1,012,131 + SM_b21345 0.78 -1.0 1,012,132 - SM_b21345 0.78 -1.0 1,012,132 - SM_b21345 0.78 +0.6 1,012,133 + SM_b21345 0.78 +1.2 1,012,133 + SM_b21345 0.78 +2.2 1,012,234 - SM_b21345 0.88 -1.0 1,012,234 - SM_b21345 0.88 -0.9 1,012,235 + SM_b21345 0.88 +0.2 1,012,235 + SM_b21345 0.88 +0.8 1,012,236 - SM_b21345 0.88 -0.4 1,012,236 - SM_b21345 0.88 -0.2
Or see this region's nucleotide sequence