Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20584 and SM_b20585 are separated by 209 nucleotides SM_b20585 and SM_b20586 are separated by 122 nucleotides
SM_b20584: SM_b20584 - hypothetical protein, at 1,598,712 to 1,599,374
_b20584
SM_b20585: SM_b20585 - gamma-glutamyltranspeptidase, at 1,599,584 to 1,601,329
_b20585
SM_b20586: SM_b20586 - IclR family transcriptional regulator, at 1,601,452 to 1,602,207
_b20586
Position (kb)
1599
1600
1601
1602 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1598.609 kb on + strand at 1598.614 kb on + strand at 1598.615 kb on - strand at 1598.637 kb on - strand at 1599.022 kb on - strand, within SM_b20584 at 1599.044 kb on - strand, within SM_b20584 at 1599.044 kb on - strand, within SM_b20584 at 1599.093 kb on + strand, within SM_b20584 at 1599.093 kb on + strand, within SM_b20584 at 1599.093 kb on + strand, within SM_b20584 at 1599.094 kb on - strand, within SM_b20584 at 1599.094 kb on - strand, within SM_b20584 at 1599.120 kb on + strand, within SM_b20584 at 1599.360 kb on + strand at 1599.361 kb on - strand at 1599.470 kb on + strand at 1599.471 kb on - strand at 1599.510 kb on + strand at 1599.610 kb on - strand at 1599.638 kb on - strand at 1599.810 kb on - strand, within SM_b20585 at 1599.926 kb on + strand, within SM_b20585 at 1599.927 kb on - strand, within SM_b20585 at 1599.927 kb on - strand, within SM_b20585 at 1599.927 kb on - strand, within SM_b20585 at 1600.031 kb on + strand, within SM_b20585 at 1600.277 kb on + strand, within SM_b20585 at 1600.277 kb on + strand, within SM_b20585 at 1600.277 kb on + strand, within SM_b20585 at 1600.277 kb on + strand, within SM_b20585 at 1600.277 kb on + strand, within SM_b20585 at 1600.278 kb on - strand, within SM_b20585 at 1600.359 kb on - strand, within SM_b20585 at 1600.395 kb on - strand, within SM_b20585 at 1600.491 kb on - strand, within SM_b20585 at 1600.491 kb on - strand, within SM_b20585 at 1600.499 kb on + strand, within SM_b20585 at 1600.500 kb on - strand, within SM_b20585 at 1600.550 kb on + strand, within SM_b20585 at 1600.550 kb on + strand, within SM_b20585 at 1600.550 kb on + strand, within SM_b20585 at 1600.551 kb on - strand, within SM_b20585 at 1600.551 kb on - strand, within SM_b20585 at 1600.625 kb on + strand, within SM_b20585 at 1600.625 kb on + strand, within SM_b20585 at 1600.767 kb on - strand, within SM_b20585 at 1600.767 kb on - strand, within SM_b20585 at 1600.875 kb on - strand, within SM_b20585 at 1601.126 kb on + strand, within SM_b20585 at 1601.126 kb on + strand, within SM_b20585 at 1601.802 kb on - strand, within SM_b20586 at 1601.871 kb on - strand, within SM_b20586 at 1601.942 kb on + strand, within SM_b20586 at 1601.943 kb on - strand, within SM_b20586 at 1601.943 kb on - strand, within SM_b20586 at 1601.955 kb on + strand, within SM_b20586 at 1601.981 kb on + strand, within SM_b20586 at 1601.982 kb on - strand, within SM_b20586 at 1601.982 kb on - strand, within SM_b20586 at 1601.982 kb on - strand, within SM_b20586 at 1602.211 kb on - strand at 1602.307 kb on + strand at 1602.307 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 1,598,609 + +0.4 1,598,614 + -0.2 1,598,615 - -1.9 1,598,637 - -2.4 1,599,022 - SM_b20584 0.47 -2.0 1,599,044 - SM_b20584 0.50 -1.7 1,599,044 - SM_b20584 0.50 -0.8 1,599,093 + SM_b20584 0.57 -0.2 1,599,093 + SM_b20584 0.57 -0.3 1,599,093 + SM_b20584 0.57 -0.1 1,599,094 - SM_b20584 0.58 -2.0 1,599,094 - SM_b20584 0.58 -3.5 1,599,120 + SM_b20584 0.62 +0.5 1,599,360 + -0.8 1,599,361 - -0.6 1,599,470 + -0.2 1,599,471 - -2.6 1,599,510 + -0.6 1,599,610 - +1.0 1,599,638 - -0.5 1,599,810 - SM_b20585 0.13 -0.4 1,599,926 + SM_b20585 0.20 +0.1 1,599,927 - SM_b20585 0.20 +0.5 1,599,927 - SM_b20585 0.20 +0.5 1,599,927 - SM_b20585 0.20 +0.1 1,600,031 + SM_b20585 0.26 -0.2 1,600,277 + SM_b20585 0.40 -0.5 1,600,277 + SM_b20585 0.40 +0.2 1,600,277 + SM_b20585 0.40 -0.1 1,600,277 + SM_b20585 0.40 -0.2 1,600,277 + SM_b20585 0.40 +0.2 1,600,278 - SM_b20585 0.40 -0.2 1,600,359 - SM_b20585 0.44 +0.5 1,600,395 - SM_b20585 0.46 -0.1 1,600,491 - SM_b20585 0.52 +0.1 1,600,491 - SM_b20585 0.52 +0.5 1,600,499 + SM_b20585 0.52 -1.8 1,600,500 - SM_b20585 0.52 -1.0 1,600,550 + SM_b20585 0.55 +1.1 1,600,550 + SM_b20585 0.55 -0.1 1,600,550 + SM_b20585 0.55 -1.2 1,600,551 - SM_b20585 0.55 +0.4 1,600,551 - SM_b20585 0.55 +0.6 1,600,625 + SM_b20585 0.60 +0.2 1,600,625 + SM_b20585 0.60 -1.8 1,600,767 - SM_b20585 0.68 +0.6 1,600,767 - SM_b20585 0.68 +0.5 1,600,875 - SM_b20585 0.74 -0.2 1,601,126 + SM_b20585 0.88 -0.7 1,601,126 + SM_b20585 0.88 +2.6 1,601,802 - SM_b20586 0.46 -0.0 1,601,871 - SM_b20586 0.55 -0.5 1,601,942 + SM_b20586 0.65 +0.4 1,601,943 - SM_b20586 0.65 -1.0 1,601,943 - SM_b20586 0.65 -0.6 1,601,955 + SM_b20586 0.67 -0.3 1,601,981 + SM_b20586 0.70 +0.2 1,601,982 - SM_b20586 0.70 -0.8 1,601,982 - SM_b20586 0.70 -3.3 1,601,982 - SM_b20586 0.70 +0.5 1,602,211 - +0.0 1,602,307 + +1.2 1,602,307 + -0.6
Or see this region's nucleotide sequence