Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20194 and SM_b20195 are separated by 3 nucleotides SM_b20195 and SM_b20196 overlap by 4 nucleotides SM_b20196 and SM_b20197 are separated by 11 nucleotides SM_b20197 and SM_b20198 are separated by 41 nucleotides
SM_b20194: SM_b20194 - hypothetical protein, at 203,136 to 203,702
_b20194
SM_b20195: SM_b20195 - pentose-5-phosphate-3-epimerase, at 203,706 to 204,392
_b20195
SM_b20196: SM_b20196 - CbbX protein, at 204,389 to 205,324
_b20196
SM_b20197: SM_b20197 - ribulose-1,5-bisphosphate carboxylase small subunit (EC 4.1.1.39) <small>(from data)</small>, at 205,336 to 205,725
_b20197
SM_b20198: SM_b20198 - ribulose bisophosphate carboxylase, at 205,767 to 207,227
_b20198
Position (kb) 204
205
206 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 203.395 kb on + strand, within SM_b20194 at 203.395 kb on + strand, within SM_b20194 at 203.458 kb on + strand, within SM_b20194 at 203.557 kb on + strand, within SM_b20194 at 203.576 kb on + strand, within SM_b20194 at 203.576 kb on + strand, within SM_b20194 at 203.617 kb on - strand, within SM_b20194 at 203.693 kb on + strand at 203.767 kb on + strand at 203.768 kb on - strand at 203.877 kb on + strand, within SM_b20195 at 204.011 kb on - strand, within SM_b20195 at 204.011 kb on - strand, within SM_b20195 at 204.011 kb on - strand, within SM_b20195 at 204.163 kb on + strand, within SM_b20195 at 204.291 kb on + strand, within SM_b20195 at 204.291 kb on + strand, within SM_b20195 at 204.292 kb on - strand, within SM_b20195 at 204.603 kb on + strand, within SM_b20196 at 204.603 kb on + strand, within SM_b20196 at 204.603 kb on + strand, within SM_b20196 at 204.692 kb on - strand, within SM_b20196 at 204.711 kb on - strand, within SM_b20196 at 204.777 kb on + strand, within SM_b20196 at 204.885 kb on + strand, within SM_b20196 at 204.886 kb on - strand, within SM_b20196 at 204.886 kb on - strand, within SM_b20196 at 204.888 kb on + strand, within SM_b20196 at 204.889 kb on - strand, within SM_b20196 at 204.889 kb on - strand, within SM_b20196 at 204.964 kb on + strand, within SM_b20196 at 204.965 kb on - strand, within SM_b20196 at 204.966 kb on + strand, within SM_b20196 at 205.020 kb on + strand, within SM_b20196 at 205.020 kb on + strand, within SM_b20196 at 205.100 kb on - strand, within SM_b20196 at 205.100 kb on - strand, within SM_b20196 at 205.356 kb on + strand at 205.356 kb on + strand at 205.356 kb on + strand at 205.356 kb on + strand at 205.357 kb on - strand at 205.357 kb on - strand at 205.357 kb on - strand at 205.357 kb on - strand at 205.357 kb on - strand at 205.357 kb on - strand at 205.358 kb on + strand at 205.358 kb on + strand at 205.359 kb on - strand at 205.489 kb on - strand, within SM_b20197 at 205.490 kb on + strand, within SM_b20197 at 205.490 kb on + strand, within SM_b20197 at 205.490 kb on + strand, within SM_b20197 at 205.490 kb on + strand, within SM_b20197 at 205.490 kb on + strand, within SM_b20197 at 205.615 kb on - strand, within SM_b20197 at 205.652 kb on + strand, within SM_b20197 at 205.720 kb on - strand at 206.026 kb on - strand, within SM_b20198 at 206.026 kb on - strand, within SM_b20198 at 206.185 kb on + strand, within SM_b20198 at 206.186 kb on - strand, within SM_b20198 at 206.189 kb on - strand, within SM_b20198 at 206.318 kb on + strand, within SM_b20198 at 206.320 kb on + strand, within SM_b20198 at 206.321 kb on - strand, within SM_b20198
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 203,395 + SM_b20194 0.46 +0.2 203,395 + SM_b20194 0.46 +0.1 203,458 + SM_b20194 0.57 +0.0 203,557 + SM_b20194 0.74 +0.5 203,576 + SM_b20194 0.78 +0.1 203,576 + SM_b20194 0.78 -0.9 203,617 - SM_b20194 0.85 +0.2 203,693 + -0.1 203,767 + +0.1 203,768 - -0.2 203,877 + SM_b20195 0.25 +0.3 204,011 - SM_b20195 0.44 +0.2 204,011 - SM_b20195 0.44 -0.2 204,011 - SM_b20195 0.44 -0.3 204,163 + SM_b20195 0.67 -0.0 204,291 + SM_b20195 0.85 -0.1 204,291 + SM_b20195 0.85 +1.5 204,292 - SM_b20195 0.85 -0.8 204,603 + SM_b20196 0.23 -4.6 204,603 + SM_b20196 0.23 -2.8 204,603 + SM_b20196 0.23 -2.9 204,692 - SM_b20196 0.32 -3.1 204,711 - SM_b20196 0.34 -2.9 204,777 + SM_b20196 0.41 -3.1 204,885 + SM_b20196 0.53 -4.1 204,886 - SM_b20196 0.53 -2.6 204,886 - SM_b20196 0.53 -4.1 204,888 + SM_b20196 0.53 -3.3 204,889 - SM_b20196 0.53 -2.4 204,889 - SM_b20196 0.53 -4.1 204,964 + SM_b20196 0.61 -3.8 204,965 - SM_b20196 0.62 -3.0 204,966 + SM_b20196 0.62 -0.3 205,020 + SM_b20196 0.67 -3.1 205,020 + SM_b20196 0.67 -2.2 205,100 - SM_b20196 0.76 -2.4 205,100 - SM_b20196 0.76 -2.1 205,356 + -5.4 205,356 + -3.6 205,356 + -3.3 205,356 + -2.8 205,357 - -0.5 205,357 - -1.9 205,357 - -3.2 205,357 - -2.3 205,357 - -0.9 205,357 - -0.5 205,358 + -1.3 205,358 + -4.2 205,359 - -4.4 205,489 - SM_b20197 0.39 -4.0 205,490 + SM_b20197 0.39 -2.2 205,490 + SM_b20197 0.39 -2.5 205,490 + SM_b20197 0.39 -0.1 205,490 + SM_b20197 0.39 -3.9 205,490 + SM_b20197 0.39 -2.5 205,615 - SM_b20197 0.72 -4.5 205,652 + SM_b20197 0.81 -2.9 205,720 - -2.9 206,026 - SM_b20198 0.18 -5.1 206,026 - SM_b20198 0.18 -3.8 206,185 + SM_b20198 0.29 -3.2 206,186 - SM_b20198 0.29 -3.7 206,189 - SM_b20198 0.29 -1.3 206,318 + SM_b20198 0.38 -1.6 206,320 + SM_b20198 0.38 -1.7 206,321 - SM_b20198 0.38 -2.3
Or see this region's nucleotide sequence