Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS16700 and RALBFv3_RS16705 overlap by 4 nucleotides RALBFv3_RS16705 and RALBFv3_RS16710 are separated by 28 nucleotides RALBFv3_RS16710 and RALBFv3_RS16715 are separated by 70 nucleotides RALBFv3_RS16715 and RALBFv3_RS16720 are separated by 4 nucleotides RALBFv3_RS16720 and RALBFv3_RS16725 are separated by 135 nucleotides
RALBFv3_RS16700: RALBFv3_RS16700 - U32 family peptidase, at 221,680 to 222,564
_RS16700
RALBFv3_RS16705: RALBFv3_RS16705 - lipid carrier protein, at 222,561 to 222,986
_RS16705
RALBFv3_RS16710: RALBFv3_RS16710 - zinc-binding protein, at 223,015 to 223,425
_RS16710
RALBFv3_RS16715: RALBFv3_RS16715 - Crp/Fnr family transcriptional regulator, at 223,496 to 224,173
_RS16715
RALBFv3_RS16720: RALBFv3_RS16720 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 224,178 to 224,924
_RS16720
RALBFv3_RS16725: RALBFv3_RS16725 - ribonucleoside triphosphate reductase, at 225,060 to 227,117
_RS16725
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 222.518 kb on - strand at 222.867 kb on - strand, within RALBFv3_RS16705 at 222.867 kb on - strand, within RALBFv3_RS16705 at 222.984 kb on + strand at 222.984 kb on + strand at 222.985 kb on - strand at 222.985 kb on - strand at 223.042 kb on + strand at 223.042 kb on + strand at 223.043 kb on - strand at 223.043 kb on - strand at 223.043 kb on - strand at 223.043 kb on - strand at 223.429 kb on - strand at 223.760 kb on - strand, within RALBFv3_RS16715 at 224.014 kb on - strand, within RALBFv3_RS16715 at 224.014 kb on - strand, within RALBFv3_RS16715 at 224.068 kb on + strand, within RALBFv3_RS16715 at 224.069 kb on + strand, within RALBFv3_RS16715 at 224.069 kb on + strand, within RALBFv3_RS16715 at 224.070 kb on - strand, within RALBFv3_RS16715 at 224.189 kb on + strand at 224.189 kb on + strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.462 kb on - strand, within RALBFv3_RS16720 at 224.484 kb on - strand, within RALBFv3_RS16720 at 224.536 kb on + strand, within RALBFv3_RS16720 at 224.536 kb on + strand, within RALBFv3_RS16720 at 224.537 kb on - strand, within RALBFv3_RS16720 at 224.537 kb on - strand, within RALBFv3_RS16720 at 224.537 kb on - strand, within RALBFv3_RS16720 at 224.537 kb on - strand, within RALBFv3_RS16720 at 224.549 kb on + strand, within RALBFv3_RS16720 at 224.550 kb on - strand, within RALBFv3_RS16720 at 224.737 kb on + strand, within RALBFv3_RS16720 at 224.738 kb on - strand, within RALBFv3_RS16720 at 224.972 kb on + strand at 224.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 222,518 - +0.1 222,867 - RALBFv3_RS16705 0.72 -0.1 222,867 - RALBFv3_RS16705 0.72 -1.7 222,984 + +3.8 222,984 + -1.2 222,985 - +0.9 222,985 - -0.9 223,042 + +1.8 223,042 + -0.2 223,043 - +0.9 223,043 - +1.4 223,043 - +1.4 223,043 - -0.2 223,429 - +1.4 223,760 - RALBFv3_RS16715 0.39 -1.9 224,014 - RALBFv3_RS16715 0.76 +0.9 224,014 - RALBFv3_RS16715 0.76 -1.1 224,068 + RALBFv3_RS16715 0.84 -1.0 224,069 + RALBFv3_RS16715 0.85 -0.3 224,069 + RALBFv3_RS16715 0.85 -1.7 224,070 - RALBFv3_RS16715 0.85 -0.1 224,189 + -0.2 224,189 + -0.8 224,190 - +0.9 224,190 - +0.4 224,190 - +0.4 224,190 - -0.5 224,190 - -0.7 224,190 - -1.1 224,190 - -0.1 224,462 - RALBFv3_RS16720 0.38 -0.4 224,484 - RALBFv3_RS16720 0.41 -0.2 224,536 + RALBFv3_RS16720 0.48 +0.2 224,536 + RALBFv3_RS16720 0.48 -1.4 224,537 - RALBFv3_RS16720 0.48 -0.1 224,537 - RALBFv3_RS16720 0.48 -0.2 224,537 - RALBFv3_RS16720 0.48 -0.5 224,537 - RALBFv3_RS16720 0.48 +0.8 224,549 + RALBFv3_RS16720 0.50 -0.3 224,550 - RALBFv3_RS16720 0.50 -0.1 224,737 + RALBFv3_RS16720 0.75 -0.1 224,738 - RALBFv3_RS16720 0.75 -1.0 224,972 + -0.6 224,973 - -0.9
Or see this region's nucleotide sequence