Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS16165

Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS16160 and RALBFv3_RS16165 are separated by 24 nucleotidesRALBFv3_RS16165 and RALBFv3_RS16170 are separated by 15 nucleotides RALBFv3_RS16160: RALBFv3_RS16160 - membrane protein, at 69,390 to 70,823 _RS16160 RALBFv3_RS16165: RALBFv3_RS16165 - hypothetical protein, at 70,848 to 71,219 _RS16165 RALBFv3_RS16170: RALBFv3_RS16170 - hypothetical protein, at 71,235 to 72,425 _RS16170 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.913 kb on + strand, within RALBFv3_RS16160at 69.959 kb on - strand, within RALBFv3_RS16160at 69.959 kb on - strand, within RALBFv3_RS16160at 70.070 kb on + strand, within RALBFv3_RS16160at 70.071 kb on - strand, within RALBFv3_RS16160at 70.071 kb on - strand, within RALBFv3_RS16160at 70.071 kb on - strand, within RALBFv3_RS16160at 70.071 kb on - strand, within RALBFv3_RS16160at 70.072 kb on + strand, within RALBFv3_RS16160at 70.072 kb on + strand, within RALBFv3_RS16160at 70.072 kb on + strand, within RALBFv3_RS16160at 70.073 kb on - strand, within RALBFv3_RS16160at 70.073 kb on - strand, within RALBFv3_RS16160at 70.135 kb on + strand, within RALBFv3_RS16160at 70.135 kb on + strand, within RALBFv3_RS16160at 70.168 kb on + strand, within RALBFv3_RS16160at 70.168 kb on + strand, within RALBFv3_RS16160at 70.168 kb on + strand, within RALBFv3_RS16160at 70.168 kb on + strand, within RALBFv3_RS16160at 70.169 kb on - strand, within RALBFv3_RS16160at 70.169 kb on - strand, within RALBFv3_RS16160at 70.169 kb on - strand, within RALBFv3_RS16160at 70.244 kb on - strand, within RALBFv3_RS16160at 70.274 kb on - strand, within RALBFv3_RS16160at 70.321 kb on - strand, within RALBFv3_RS16160at 70.357 kb on + strand, within RALBFv3_RS16160at 70.414 kb on + strand, within RALBFv3_RS16160at 70.414 kb on + strand, within RALBFv3_RS16160at 70.415 kb on - strand, within RALBFv3_RS16160at 70.423 kb on + strand, within RALBFv3_RS16160at 70.423 kb on + strand, within RALBFv3_RS16160at 70.423 kb on + strand, within RALBFv3_RS16160at 70.424 kb on - strand, within RALBFv3_RS16160at 70.424 kb on - strand, within RALBFv3_RS16160at 70.424 kb on - strand, within RALBFv3_RS16160at 70.471 kb on + strand, within RALBFv3_RS16160at 70.471 kb on + strand, within RALBFv3_RS16160at 70.471 kb on + strand, within RALBFv3_RS16160at 70.471 kb on + strand, within RALBFv3_RS16160at 70.471 kb on + strand, within RALBFv3_RS16160at 70.472 kb on - strand, within RALBFv3_RS16160at 70.638 kb on + strand, within RALBFv3_RS16160at 70.638 kb on + strand, within RALBFv3_RS16160at 70.639 kb on + strand, within RALBFv3_RS16160at 70.639 kb on + strand, within RALBFv3_RS16160at 70.640 kb on - strand, within RALBFv3_RS16160at 70.640 kb on - strand, within RALBFv3_RS16160at 70.640 kb on - strand, within RALBFv3_RS16160at 70.640 kb on - strand, within RALBFv3_RS16160at 70.852 kb on - strandat 70.852 kb on - strandat 70.852 kb on - strandat 70.868 kb on - strandat 70.868 kb on - strandat 71.237 kb on - strandat 71.237 kb on - strandat 71.372 kb on + strand, within RALBFv3_RS16170at 71.404 kb on + strand, within RALBFv3_RS16170at 71.405 kb on - strand, within RALBFv3_RS16170at 71.489 kb on - strand, within RALBFv3_RS16170at 71.489 kb on - strand, within RALBFv3_RS16170at 71.489 kb on - strand, within RALBFv3_RS16170at 71.489 kb on - strand, within RALBFv3_RS16170at 71.497 kb on + strand, within RALBFv3_RS16170at 71.497 kb on + strand, within RALBFv3_RS16170at 71.497 kb on + strand, within RALBFv3_RS16170at 71.497 kb on + strand, within RALBFv3_RS16170at 71.498 kb on - strand, within RALBFv3_RS16170at 71.530 kb on + strand, within RALBFv3_RS16170at 71.531 kb on - strand, within RALBFv3_RS16170at 71.644 kb on + strand, within RALBFv3_RS16170at 71.645 kb on - strand, within RALBFv3_RS16170at 71.696 kb on - strand, within RALBFv3_RS16170at 71.698 kb on + strand, within RALBFv3_RS16170at 71.698 kb on + strand, within RALBFv3_RS16170at 71.698 kb on + strand, within RALBFv3_RS16170at 71.698 kb on + strand, within RALBFv3_RS16170at 71.698 kb on + strand, within RALBFv3_RS16170at 71.699 kb on - strand, within RALBFv3_RS16170at 71.699 kb on - strand, within RALBFv3_RS16170at 71.710 kb on + strand, within RALBFv3_RS16170at 71.710 kb on + strand, within RALBFv3_RS16170at 71.890 kb on + strand, within RALBFv3_RS16170at 71.890 kb on + strand, within RALBFv3_RS16170at 71.891 kb on - strand, within RALBFv3_RS16170at 72.066 kb on + strand, within RALBFv3_RS16170at 72.115 kb on + strand, within RALBFv3_RS16170at 72.197 kb on - strand, within RALBFv3_RS16170at 72.197 kb on - strand, within RALBFv3_RS16170

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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69,913 + RALBFv3_RS16160 0.36 +1.0
69,959 - RALBFv3_RS16160 0.40 +1.5
69,959 - RALBFv3_RS16160 0.40 -0.1
70,070 + RALBFv3_RS16160 0.47 -1.3
70,071 - RALBFv3_RS16160 0.47 +1.2
70,071 - RALBFv3_RS16160 0.47 +1.5
70,071 - RALBFv3_RS16160 0.47 -1.4
70,071 - RALBFv3_RS16160 0.47 -0.5
70,072 + RALBFv3_RS16160 0.48 -0.9
70,072 + RALBFv3_RS16160 0.48 -1.4
70,072 + RALBFv3_RS16160 0.48 -0.5
70,073 - RALBFv3_RS16160 0.48 -0.8
70,073 - RALBFv3_RS16160 0.48 -2.4
70,135 + RALBFv3_RS16160 0.52 -0.5
70,135 + RALBFv3_RS16160 0.52 +0.5
70,168 + RALBFv3_RS16160 0.54 -1.5
70,168 + RALBFv3_RS16160 0.54 -0.5
70,168 + RALBFv3_RS16160 0.54 -2.9
70,168 + RALBFv3_RS16160 0.54 -1.4
70,169 - RALBFv3_RS16160 0.54 +0.9
70,169 - RALBFv3_RS16160 0.54 +1.5
70,169 - RALBFv3_RS16160 0.54 +0.7
70,244 - RALBFv3_RS16160 0.60 -0.8
70,274 - RALBFv3_RS16160 0.62 -0.7
70,321 - RALBFv3_RS16160 0.65 -0.6
70,357 + RALBFv3_RS16160 0.67 -0.9
70,414 + RALBFv3_RS16160 0.71 -1.0
70,414 + RALBFv3_RS16160 0.71 +0.1
70,415 - RALBFv3_RS16160 0.71 -0.7
70,423 + RALBFv3_RS16160 0.72 -0.2
70,423 + RALBFv3_RS16160 0.72 +0.2
70,423 + RALBFv3_RS16160 0.72 -0.4
70,424 - RALBFv3_RS16160 0.72 +0.4
70,424 - RALBFv3_RS16160 0.72 -2.1
70,424 - RALBFv3_RS16160 0.72 +1.5
70,471 + RALBFv3_RS16160 0.75 -0.1
70,471 + RALBFv3_RS16160 0.75 -0.5
70,471 + RALBFv3_RS16160 0.75 -0.8
70,471 + RALBFv3_RS16160 0.75 +0.6
70,471 + RALBFv3_RS16160 0.75 -0.1
70,472 - RALBFv3_RS16160 0.75 -0.4
70,638 + RALBFv3_RS16160 0.87 -1.1
70,638 + RALBFv3_RS16160 0.87 +0.5
70,639 + RALBFv3_RS16160 0.87 +1.0
70,639 + RALBFv3_RS16160 0.87 -1.4
70,640 - RALBFv3_RS16160 0.87 -1.0
70,640 - RALBFv3_RS16160 0.87 +0.1
70,640 - RALBFv3_RS16160 0.87 -1.1
70,640 - RALBFv3_RS16160 0.87 +0.9
70,852 - -0.7
70,852 - -1.2
70,852 - -1.7
70,868 - -1.3
70,868 - +0.1
71,237 - +0.5
71,237 - +0.1
71,372 + RALBFv3_RS16170 0.12 +0.9
71,404 + RALBFv3_RS16170 0.14 -0.7
71,405 - RALBFv3_RS16170 0.14 -0.5
71,489 - RALBFv3_RS16170 0.21 +0.5
71,489 - RALBFv3_RS16170 0.21 -0.3
71,489 - RALBFv3_RS16170 0.21 +0.5
71,489 - RALBFv3_RS16170 0.21 -1.5
71,497 + RALBFv3_RS16170 0.22 -0.2
71,497 + RALBFv3_RS16170 0.22 -0.0
71,497 + RALBFv3_RS16170 0.22 +0.3
71,497 + RALBFv3_RS16170 0.22 +0.9
71,498 - RALBFv3_RS16170 0.22 +0.5
71,530 + RALBFv3_RS16170 0.25 -0.5
71,531 - RALBFv3_RS16170 0.25 +1.8
71,644 + RALBFv3_RS16170 0.34 -1.2
71,645 - RALBFv3_RS16170 0.34 -1.3
71,696 - RALBFv3_RS16170 0.39 -0.6
71,698 + RALBFv3_RS16170 0.39 -0.1
71,698 + RALBFv3_RS16170 0.39 -1.3
71,698 + RALBFv3_RS16170 0.39 +0.5
71,698 + RALBFv3_RS16170 0.39 +0.3
71,698 + RALBFv3_RS16170 0.39 -0.8
71,699 - RALBFv3_RS16170 0.39 +0.7
71,699 - RALBFv3_RS16170 0.39 +0.6
71,710 + RALBFv3_RS16170 0.40 +1.3
71,710 + RALBFv3_RS16170 0.40 +1.9
71,890 + RALBFv3_RS16170 0.55 +0.4
71,890 + RALBFv3_RS16170 0.55 +1.2
71,891 - RALBFv3_RS16170 0.55 -1.6
72,066 + RALBFv3_RS16170 0.70 -0.5
72,115 + RALBFv3_RS16170 0.74 -0.1
72,197 - RALBFv3_RS16170 0.81 -0.4
72,197 - RALBFv3_RS16170 0.81 +1.5

Or see this region's nucleotide sequence