Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS15745 and RALBFv3_RS15750 are separated by 16 nucleotides RALBFv3_RS15750 and RALBFv3_RS24085 are separated by 48 nucleotides RALBFv3_RS24085 and RALBFv3_RS15755 are separated by 68 nucleotides RALBFv3_RS15755 and RALBFv3_RS15760 are separated by 114 nucleotides
RALBFv3_RS15745: RALBFv3_RS15745 - aminoacyl-histidine dipeptidase (carnosinase) (xaa-his dipeptidase) protein, at 3,432,653 to 3,434,386
_RS15745
RALBFv3_RS15750: RALBFv3_RS15750 - cupin, at 3,434,403 to 3,434,716
_RS15750
RALBFv3_RS24085: RALBFv3_RS24085 - hypothetical protein, at 3,434,765 to 3,434,971
_RS24085
RALBFv3_RS15755: RALBFv3_RS15755 - hypothetical protein, at 3,435,040 to 3,435,225
_RS15755
RALBFv3_RS15760: RALBFv3_RS15760 - transcriptional repressor LexA, at 3,435,340 to 3,435,990
_RS15760
Position (kb) 3434
3435 Strain fitness (log2 ratio) -1
0
1
2 at 3433.403 kb on + strand, within RALBFv3_RS15745 at 3433.403 kb on + strand, within RALBFv3_RS15745 at 3433.404 kb on - strand, within RALBFv3_RS15745 at 3433.433 kb on + strand, within RALBFv3_RS15745 at 3433.433 kb on + strand, within RALBFv3_RS15745 at 3433.433 kb on + strand, within RALBFv3_RS15745 at 3433.434 kb on - strand, within RALBFv3_RS15745 at 3433.874 kb on + strand, within RALBFv3_RS15745 at 3433.875 kb on - strand, within RALBFv3_RS15745 at 3433.875 kb on - strand, within RALBFv3_RS15745 at 3433.999 kb on - strand, within RALBFv3_RS15745 at 3434.300 kb on + strand at 3434.301 kb on - strand at 3434.301 kb on - strand at 3434.384 kb on + strand at 3434.459 kb on + strand, within RALBFv3_RS15750 at 3434.807 kb on - strand, within RALBFv3_RS24085 at 3434.810 kb on - strand, within RALBFv3_RS24085 at 3434.810 kb on - strand, within RALBFv3_RS24085 at 3435.147 kb on - strand, within RALBFv3_RS15755 at 3435.147 kb on - strand, within RALBFv3_RS15755 at 3435.147 kb on - strand, within RALBFv3_RS15755 at 3435.654 kb on - strand, within RALBFv3_RS15760
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 3,433,403 + RALBFv3_RS15745 0.43 +2.1 3,433,403 + RALBFv3_RS15745 0.43 -0.6 3,433,404 - RALBFv3_RS15745 0.43 -0.2 3,433,433 + RALBFv3_RS15745 0.45 -0.6 3,433,433 + RALBFv3_RS15745 0.45 +0.2 3,433,433 + RALBFv3_RS15745 0.45 -0.6 3,433,434 - RALBFv3_RS15745 0.45 -0.2 3,433,874 + RALBFv3_RS15745 0.70 -0.4 3,433,875 - RALBFv3_RS15745 0.70 -0.3 3,433,875 - RALBFv3_RS15745 0.70 -0.0 3,433,999 - RALBFv3_RS15745 0.78 -0.4 3,434,300 + -0.2 3,434,301 - -1.0 3,434,301 - +0.3 3,434,384 + +0.4 3,434,459 + RALBFv3_RS15750 0.18 -1.5 3,434,807 - RALBFv3_RS24085 0.20 -1.5 3,434,810 - RALBFv3_RS24085 0.22 -0.9 3,434,810 - RALBFv3_RS24085 0.22 +1.9 3,435,147 - RALBFv3_RS15755 0.58 -0.8 3,435,147 - RALBFv3_RS15755 0.58 +1.0 3,435,147 - RALBFv3_RS15755 0.58 -1.2 3,435,654 - RALBFv3_RS15760 0.48 -0.2
Or see this region's nucleotide sequence