Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS06710 and RALBFv3_RS06715 are separated by 60 nucleotides RALBFv3_RS06715 and RALBFv3_RS06720 are separated by 146 nucleotides RALBFv3_RS06720 and RALBFv3_RS06725 are separated by 26 nucleotides
RALBFv3_RS06710: RALBFv3_RS06710 - ClpXP protease specificity-enhancing factor, at 1,494,500 to 1,495,000
_RS06710
RALBFv3_RS06715: RALBFv3_RS06715 - stringent starvation protein A, at 1,495,061 to 1,495,672
_RS06715
RALBFv3_RS06720: RALBFv3_RS06720 - cytochrome c, at 1,495,819 to 1,496,565
_RS06720
RALBFv3_RS06725: RALBFv3_RS06725 - cytochrome b, at 1,496,592 to 1,497,995
_RS06725
Position (kb) 1495
1496
1497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1494.924 kb on + strand, within RALBFv3_RS06710 at 1494.924 kb on + strand, within RALBFv3_RS06710 at 1494.925 kb on - strand, within RALBFv3_RS06710 at 1494.925 kb on - strand, within RALBFv3_RS06710 at 1494.958 kb on - strand at 1495.775 kb on - strand at 1495.950 kb on - strand, within RALBFv3_RS06720 at 1495.979 kb on + strand, within RALBFv3_RS06720 at 1496.189 kb on + strand, within RALBFv3_RS06720 at 1496.189 kb on + strand, within RALBFv3_RS06720 at 1496.190 kb on - strand at 1496.190 kb on - strand, within RALBFv3_RS06720 at 1496.190 kb on - strand, within RALBFv3_RS06720 at 1496.193 kb on + strand, within RALBFv3_RS06720 at 1496.193 kb on + strand, within RALBFv3_RS06720 at 1496.193 kb on + strand, within RALBFv3_RS06720 at 1496.193 kb on + strand, within RALBFv3_RS06720 at 1496.194 kb on - strand, within RALBFv3_RS06720 at 1496.194 kb on - strand, within RALBFv3_RS06720 at 1496.378 kb on + strand, within RALBFv3_RS06720 at 1496.414 kb on + strand, within RALBFv3_RS06720 at 1496.415 kb on - strand, within RALBFv3_RS06720 at 1496.681 kb on - strand at 1497.061 kb on + strand, within RALBFv3_RS06725 at 1497.232 kb on + strand, within RALBFv3_RS06725 at 1497.233 kb on - strand, within RALBFv3_RS06725 at 1497.233 kb on - strand, within RALBFv3_RS06725 at 1497.235 kb on + strand, within RALBFv3_RS06725 at 1497.235 kb on + strand, within RALBFv3_RS06725 at 1497.236 kb on - strand, within RALBFv3_RS06725 at 1497.515 kb on - strand, within RALBFv3_RS06725
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,494,924 + RALBFv3_RS06710 0.85 +2.2 1,494,924 + RALBFv3_RS06710 0.85 +0.3 1,494,925 - RALBFv3_RS06710 0.85 +1.3 1,494,925 - RALBFv3_RS06710 0.85 -0.2 1,494,958 - +1.6 1,495,775 - +0.9 1,495,950 - RALBFv3_RS06720 0.18 +2.7 1,495,979 + RALBFv3_RS06720 0.21 +0.3 1,496,189 + RALBFv3_RS06720 0.50 +0.3 1,496,189 + RALBFv3_RS06720 0.50 -3.3 1,496,190 - +0.5 1,496,190 - RALBFv3_RS06720 0.50 -0.1 1,496,190 - RALBFv3_RS06720 0.50 -1.0 1,496,193 + RALBFv3_RS06720 0.50 -2.1 1,496,193 + RALBFv3_RS06720 0.50 -1.5 1,496,193 + RALBFv3_RS06720 0.50 +0.9 1,496,193 + RALBFv3_RS06720 0.50 +0.9 1,496,194 - RALBFv3_RS06720 0.50 -0.7 1,496,194 - RALBFv3_RS06720 0.50 -1.7 1,496,378 + RALBFv3_RS06720 0.75 -1.1 1,496,414 + RALBFv3_RS06720 0.80 -1.0 1,496,415 - RALBFv3_RS06720 0.80 -1.3 1,496,681 - -0.9 1,497,061 + RALBFv3_RS06725 0.33 -1.1 1,497,232 + RALBFv3_RS06725 0.46 -1.9 1,497,233 - RALBFv3_RS06725 0.46 -0.1 1,497,233 - RALBFv3_RS06725 0.46 +3.3 1,497,235 + RALBFv3_RS06725 0.46 +0.9 1,497,235 + RALBFv3_RS06725 0.46 +2.9 1,497,236 - RALBFv3_RS06725 0.46 -0.2 1,497,515 - RALBFv3_RS06725 0.66 -1.2
Or see this region's nucleotide sequence