Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03365 and RALBFv3_RS03370 are separated by 180 nucleotides RALBFv3_RS03370 and RALBFv3_RS03375 are separated by 49 nucleotides RALBFv3_RS03375 and RALBFv3_RS03380 are separated by 143 nucleotides
RALBFv3_RS03365: RALBFv3_RS03365 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 733,230 to 734,996
_RS03365
RALBFv3_RS03370: RALBFv3_RS03370 - DUF1851 domain-containing protein, at 735,177 to 735,794
_RS03370
RALBFv3_RS03375: RALBFv3_RS03375 - hypothetical protein, at 735,844 to 736,107
_RS03375
RALBFv3_RS03380: RALBFv3_RS03380 - IS3 family transposase, at 736,251 to 737,485
_RS03380
Position (kb) 735
736 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 734.437 kb on - strand, within RALBFv3_RS03365 at 734.773 kb on + strand, within RALBFv3_RS03365 at 734.774 kb on - strand, within RALBFv3_RS03365 at 734.990 kb on - strand at 734.996 kb on + strand at 734.997 kb on - strand at 734.997 kb on - strand at 734.997 kb on - strand at 735.099 kb on + strand at 735.099 kb on + strand at 735.148 kb on + strand at 735.148 kb on + strand at 735.149 kb on - strand at 735.149 kb on - strand at 735.153 kb on - strand at 735.153 kb on - strand at 735.153 kb on - strand at 735.153 kb on - strand at 735.153 kb on - strand at 735.343 kb on + strand, within RALBFv3_RS03370 at 735.344 kb on - strand, within RALBFv3_RS03370 at 735.412 kb on + strand, within RALBFv3_RS03370 at 735.413 kb on - strand, within RALBFv3_RS03370 at 735.517 kb on - strand, within RALBFv3_RS03370 at 735.632 kb on + strand, within RALBFv3_RS03370 at 735.652 kb on + strand, within RALBFv3_RS03370 at 735.758 kb on + strand at 735.758 kb on + strand at 735.759 kb on - strand at 735.759 kb on - strand at 735.795 kb on - strand at 735.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 734,437 - RALBFv3_RS03365 0.68 +0.0 734,773 + RALBFv3_RS03365 0.87 +0.2 734,774 - RALBFv3_RS03365 0.87 -1.9 734,990 - +0.2 734,996 + -1.0 734,997 - -0.5 734,997 - -0.1 734,997 - +0.5 735,099 + -0.2 735,099 + +0.7 735,148 + +1.4 735,148 + -0.9 735,149 - -0.5 735,149 - +3.6 735,153 - +0.0 735,153 - +1.6 735,153 - -0.2 735,153 - -2.2 735,153 - -0.4 735,343 + RALBFv3_RS03370 0.27 +0.2 735,344 - RALBFv3_RS03370 0.27 -0.5 735,412 + RALBFv3_RS03370 0.38 -0.4 735,413 - RALBFv3_RS03370 0.38 +0.0 735,517 - RALBFv3_RS03370 0.55 +0.2 735,632 + RALBFv3_RS03370 0.74 +0.2 735,652 + RALBFv3_RS03370 0.77 -1.1 735,758 + -0.1 735,758 + +0.3 735,759 - -1.0 735,759 - -0.4 735,795 - -0.1 735,856 - -0.5
Or see this region's nucleotide sequence