Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02540 and RALBFv3_RS02545 are separated by 23 nucleotides RALBFv3_RS02545 and RALBFv3_RS02550 are separated by 123 nucleotides RALBFv3_RS02550 and RALBFv3_RS02555 are separated by 97 nucleotides RALBFv3_RS02555 and RALBFv3_RS02560 are separated by 72 nucleotides
RALBFv3_RS02540: RALBFv3_RS02540 - nodulation factor ABC transporter ATP-binding protein NodI, at 565,410 to 566,375
_RS02540
RALBFv3_RS02545: RALBFv3_RS02545 - nodulation protein NodJ, at 566,399 to 567,220
_RS02545
RALBFv3_RS02550: RALBFv3_RS02550 - amidophosphoribosyltransferase, at 567,344 to 568,879
_RS02550
RALBFv3_RS02555: RALBFv3_RS02555 - colicin V biosynthesis protein, at 568,977 to 569,474
_RS02555
RALBFv3_RS02560: RALBFv3_RS02560 - SPOR domain-containing protein, at 569,547 to 570,386
_RS02560
Position (kb) 567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 566.483 kb on + strand, within RALBFv3_RS02545 at 566.564 kb on + strand, within RALBFv3_RS02545 at 566.564 kb on + strand, within RALBFv3_RS02545 at 566.624 kb on + strand, within RALBFv3_RS02545 at 566.693 kb on + strand, within RALBFv3_RS02545 at 566.694 kb on - strand, within RALBFv3_RS02545 at 566.745 kb on - strand, within RALBFv3_RS02545 at 567.161 kb on + strand at 567.162 kb on - strand at 568.903 kb on - strand at 569.048 kb on - strand, within RALBFv3_RS02555 at 569.251 kb on - strand, within RALBFv3_RS02555 at 569.343 kb on - strand, within RALBFv3_RS02555 at 569.343 kb on - strand, within RALBFv3_RS02555
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 566,483 + RALBFv3_RS02545 0.10 +0.3 566,564 + RALBFv3_RS02545 0.20 +1.1 566,564 + RALBFv3_RS02545 0.20 -0.5 566,624 + RALBFv3_RS02545 0.27 -1.5 566,693 + RALBFv3_RS02545 0.36 -0.3 566,694 - RALBFv3_RS02545 0.36 +0.0 566,745 - RALBFv3_RS02545 0.42 +0.8 567,161 + +1.2 567,162 - -1.8 568,903 - -0.5 569,048 - RALBFv3_RS02555 0.14 +2.8 569,251 - RALBFv3_RS02555 0.55 +3.1 569,343 - RALBFv3_RS02555 0.73 -0.1 569,343 - RALBFv3_RS02555 0.73 -1.2
Or see this region's nucleotide sequence