Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02465

Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02460 and RALBFv3_RS02465 are separated by 29 nucleotidesRALBFv3_RS02465 and RALBFv3_RS02470 are separated by 121 nucleotides RALBFv3_RS02460: RALBFv3_RS02460 - fumarate hydratase, at 550,642 to 552,165 _RS02460 RALBFv3_RS02465: RALBFv3_RS02465 - glutamate racemase, at 552,195 to 553,028 _RS02465 RALBFv3_RS02470: RALBFv3_RS02470 - dicarboxylate/amino acid:cation symporter, at 553,150 to 554,445 _RS02470 Position (kb) 552 553 554Strain fitness (log2 ratio) -3 -2 -1 0 1at 551.762 kb on - strand, within RALBFv3_RS02460at 551.765 kb on - strand, within RALBFv3_RS02460at 551.972 kb on - strand, within RALBFv3_RS02460at 552.040 kb on + strandat 552.164 kb on - strandat 552.412 kb on + strand, within RALBFv3_RS02465at 552.413 kb on - strand, within RALBFv3_RS02465at 552.760 kb on - strand, within RALBFv3_RS02465at 552.760 kb on - strand, within RALBFv3_RS02465at 553.236 kb on - strandat 553.475 kb on + strand, within RALBFv3_RS02470at 553.475 kb on + strand, within RALBFv3_RS02470at 553.476 kb on - strand, within RALBFv3_RS02470at 553.777 kb on + strand, within RALBFv3_RS02470at 553.778 kb on + strand, within RALBFv3_RS02470

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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551,762 - RALBFv3_RS02460 0.73 -2.1
551,765 - RALBFv3_RS02460 0.74 -0.3
551,972 - RALBFv3_RS02460 0.87 -3.5
552,040 + -0.1
552,164 - -1.3
552,412 + RALBFv3_RS02465 0.26 -0.7
552,413 - RALBFv3_RS02465 0.26 -0.9
552,760 - RALBFv3_RS02465 0.68 -1.2
552,760 - RALBFv3_RS02465 0.68 +0.5
553,236 - -0.2
553,475 + RALBFv3_RS02470 0.25 -0.3
553,475 + RALBFv3_RS02470 0.25 -1.1
553,476 - RALBFv3_RS02470 0.25 +0.2
553,777 + RALBFv3_RS02470 0.48 -0.2
553,778 + RALBFv3_RS02470 0.48 -0.5

Or see this region's nucleotide sequence