Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02365 and RALBFv3_RS02370 are separated by 37 nucleotides RALBFv3_RS02370 and RALBFv3_RS02375 are separated by 7 nucleotides
RALBFv3_RS02365: RALBFv3_RS02365 - ABC transporter ATP-binding protein, at 526,199 to 527,200
_RS02365
RALBFv3_RS02370: RALBFv3_RS02370 - ABC transporter substrate-binding protein, at 527,238 to 528,806
_RS02370
RALBFv3_RS02375: RALBFv3_RS02375 - Long-chain fatty-acyl-CoA hydrolase, at 528,814 to 530,724
_RS02375
Position (kb) 527
528
529 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 526.628 kb on + strand, within RALBFv3_RS02365 at 526.853 kb on + strand, within RALBFv3_RS02365 at 526.854 kb on - strand, within RALBFv3_RS02365 at 526.916 kb on + strand, within RALBFv3_RS02365 at 526.916 kb on + strand, within RALBFv3_RS02365 at 526.917 kb on - strand, within RALBFv3_RS02365 at 526.917 kb on - strand, within RALBFv3_RS02365 at 526.917 kb on - strand, within RALBFv3_RS02365 at 527.553 kb on + strand, within RALBFv3_RS02370 at 527.554 kb on - strand, within RALBFv3_RS02370 at 527.554 kb on - strand, within RALBFv3_RS02370 at 527.748 kb on + strand, within RALBFv3_RS02370 at 527.799 kb on + strand, within RALBFv3_RS02370 at 527.841 kb on + strand, within RALBFv3_RS02370 at 527.877 kb on + strand, within RALBFv3_RS02370 at 527.877 kb on + strand, within RALBFv3_RS02370 at 528.000 kb on + strand, within RALBFv3_RS02370 at 528.064 kb on - strand, within RALBFv3_RS02370 at 528.255 kb on + strand, within RALBFv3_RS02370 at 528.256 kb on - strand, within RALBFv3_RS02370 at 528.579 kb on + strand, within RALBFv3_RS02370 at 528.581 kb on + strand, within RALBFv3_RS02370 at 528.581 kb on + strand, within RALBFv3_RS02370 at 528.581 kb on + strand, within RALBFv3_RS02370 at 528.581 kb on + strand, within RALBFv3_RS02370 at 528.582 kb on - strand, within RALBFv3_RS02370 at 528.582 kb on - strand, within RALBFv3_RS02370 at 528.582 kb on - strand, within RALBFv3_RS02370 at 528.705 kb on + strand at 528.706 kb on - strand at 528.706 kb on - strand at 528.706 kb on - strand at 528.712 kb on - strand at 529.036 kb on + strand, within RALBFv3_RS02375 at 529.349 kb on - strand, within RALBFv3_RS02375 at 529.385 kb on - strand, within RALBFv3_RS02375 at 529.411 kb on + strand, within RALBFv3_RS02375 at 529.580 kb on - strand, within RALBFv3_RS02375 at 529.580 kb on - strand, within RALBFv3_RS02375 at 529.658 kb on - strand, within RALBFv3_RS02375
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 526,628 + RALBFv3_RS02365 0.43 -0.9 526,853 + RALBFv3_RS02365 0.65 +0.5 526,854 - RALBFv3_RS02365 0.65 +0.2 526,916 + RALBFv3_RS02365 0.72 +3.1 526,916 + RALBFv3_RS02365 0.72 +0.7 526,917 - RALBFv3_RS02365 0.72 -0.9 526,917 - RALBFv3_RS02365 0.72 +1.1 526,917 - RALBFv3_RS02365 0.72 -0.0 527,553 + RALBFv3_RS02370 0.20 +0.2 527,554 - RALBFv3_RS02370 0.20 -0.5 527,554 - RALBFv3_RS02370 0.20 -0.1 527,748 + RALBFv3_RS02370 0.33 -0.9 527,799 + RALBFv3_RS02370 0.36 -1.9 527,841 + RALBFv3_RS02370 0.38 +0.5 527,877 + RALBFv3_RS02370 0.41 -0.3 527,877 + RALBFv3_RS02370 0.41 -0.2 528,000 + RALBFv3_RS02370 0.49 +0.5 528,064 - RALBFv3_RS02370 0.53 -0.7 528,255 + RALBFv3_RS02370 0.65 +1.7 528,256 - RALBFv3_RS02370 0.65 +1.1 528,579 + RALBFv3_RS02370 0.85 +0.5 528,581 + RALBFv3_RS02370 0.86 -0.8 528,581 + RALBFv3_RS02370 0.86 -2.4 528,581 + RALBFv3_RS02370 0.86 +0.5 528,581 + RALBFv3_RS02370 0.86 -0.1 528,582 - RALBFv3_RS02370 0.86 -0.4 528,582 - RALBFv3_RS02370 0.86 +0.5 528,582 - RALBFv3_RS02370 0.86 -0.8 528,705 + +0.3 528,706 - -0.7 528,706 - +1.5 528,706 - +0.7 528,712 - -1.7 529,036 + RALBFv3_RS02375 0.12 +0.5 529,349 - RALBFv3_RS02375 0.28 -0.1 529,385 - RALBFv3_RS02375 0.30 -0.6 529,411 + RALBFv3_RS02375 0.31 +0.3 529,580 - RALBFv3_RS02375 0.40 +0.9 529,580 - RALBFv3_RS02375 0.40 -1.6 529,658 - RALBFv3_RS02375 0.44 -0.2
Or see this region's nucleotide sequence