Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01425 and RALBFv3_RS01430 are separated by 88 nucleotides RALBFv3_RS01430 and RALBFv3_RS01435 are separated by 95 nucleotides RALBFv3_RS01435 and RALBFv3_RS01440 overlap by 4 nucleotides RALBFv3_RS01440 and RALBFv3_RS01445 are separated by 175 nucleotides
RALBFv3_RS01425: RALBFv3_RS01425 - peroxiredoxin, at 320,526 to 321,074
_RS01425
RALBFv3_RS01430: RALBFv3_RS01430 - carboxymuconolactone decarboxylase family protein, at 321,163 to 321,690
_RS01430
RALBFv3_RS01435: RALBFv3_RS01435 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 321,786 to 322,292
_RS01435
RALBFv3_RS01440: RALBFv3_RS01440 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 322,289 to 323,050
_RS01440
RALBFv3_RS01445: RALBFv3_RS01445 - transcription-repair coupling factor, at 323,226 to 326,669
_RS01445
Position (kb) 321
322
323 Strain fitness (log2 ratio) -1
0
1 at 321.202 kb on + strand at 321.482 kb on - strand, within RALBFv3_RS01430 at 321.523 kb on + strand, within RALBFv3_RS01430 at 321.524 kb on - strand, within RALBFv3_RS01430 at 321.524 kb on - strand, within RALBFv3_RS01430 at 321.524 kb on - strand, within RALBFv3_RS01430 at 321.524 kb on - strand, within RALBFv3_RS01430 at 323.130 kb on - strand at 323.249 kb on + strand at 323.249 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 321,202 + -0.8 321,482 - RALBFv3_RS01430 0.60 +1.3 321,523 + RALBFv3_RS01430 0.68 +1.2 321,524 - RALBFv3_RS01430 0.68 -0.5 321,524 - RALBFv3_RS01430 0.68 -0.7 321,524 - RALBFv3_RS01430 0.68 +0.1 321,524 - RALBFv3_RS01430 0.68 -0.0 323,130 - +0.9 323,249 + -1.7 323,249 + -0.5
Or see this region's nucleotide sequence