Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS00635

Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS00630 and RALBFv3_RS00635 are separated by 112 nucleotidesRALBFv3_RS00635 and RALBFv3_RS00640 are separated by 221 nucleotidesRALBFv3_RS00640 and RALBFv3_RS00645 are separated by 162 nucleotides RALBFv3_RS00630: RALBFv3_RS00630 - muramoyltetrapeptide carboxypeptidase, at 139,104 to 140,030 _RS00630 RALBFv3_RS00635: RALBFv3_RS00635 - ABC-F family ATPase, at 140,143 to 141,765 _RS00635 RALBFv3_RS00640: RALBFv3_RS00640 - hypothetical protein, at 141,987 to 142,529 _RS00640 RALBFv3_RS00645: RALBFv3_RS00645 - aldehyde dehydrogenase family protein, at 142,692 to 144,128 _RS00645 Position (kb) 140 141 142Strain fitness (log2 ratio) -2 -1 0 1 2at 140.449 kb on + strand, within RALBFv3_RS00635at 140.509 kb on + strand, within RALBFv3_RS00635at 140.851 kb on + strand, within RALBFv3_RS00635at 140.860 kb on + strand, within RALBFv3_RS00635at 140.861 kb on - strand, within RALBFv3_RS00635at 141.322 kb on + strand, within RALBFv3_RS00635at 141.727 kb on + strandat 141.727 kb on + strandat 142.337 kb on - strand, within RALBFv3_RS00640at 142.514 kb on - strandat 142.586 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
remove
140,449 + RALBFv3_RS00635 0.19 -0.9
140,509 + RALBFv3_RS00635 0.23 +0.4
140,851 + RALBFv3_RS00635 0.44 +0.6
140,860 + RALBFv3_RS00635 0.44 -2.1
140,861 - RALBFv3_RS00635 0.44 -0.9
141,322 + RALBFv3_RS00635 0.73 +0.1
141,727 + +2.0
141,727 + -0.7
142,337 - RALBFv3_RS00640 0.64 -1.4
142,514 - +0.8
142,586 + -0.1

Or see this region's nucleotide sequence