Experiment: Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00085 and RALBFv3_RS00090 are separated by 1 nucleotides RALBFv3_RS00090 and RALBFv3_RS00095 overlap by 4 nucleotides RALBFv3_RS00095 and RALBFv3_RS00100 are separated by 31 nucleotides
RALBFv3_RS00085: RALBFv3_RS00085 - sulfate ABC transporter permease subunit CysT, at 16,317 to 17,237
_RS00085
RALBFv3_RS00090: RALBFv3_RS00090 - sulfate ABC transporter permease subunit CysW, at 17,239 to 18,213
_RS00090
RALBFv3_RS00095: RALBFv3_RS00095 - sulfate ABC transporter ATP-binding protein, at 18,210 to 19,322
_RS00095
RALBFv3_RS00100: RALBFv3_RS00100 - CysB family HTH-type transcriptional regulator, at 19,354 to 20,337
_RS00100
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1 at 17.624 kb on - strand, within RALBFv3_RS00090 at 17.856 kb on + strand, within RALBFv3_RS00090 at 17.999 kb on - strand, within RALBFv3_RS00090 at 17.999 kb on - strand, within RALBFv3_RS00090 at 18.456 kb on + strand, within RALBFv3_RS00095 at 18.456 kb on + strand, within RALBFv3_RS00095 at 19.432 kb on + strand at 19.843 kb on + strand, within RALBFv3_RS00100 at 19.942 kb on + strand, within RALBFv3_RS00100 at 20.050 kb on + strand, within RALBFv3_RS00100 at 20.051 kb on - strand, within RALBFv3_RS00100 at 20.051 kb on - strand, within RALBFv3_RS00100 at 20.188 kb on + strand, within RALBFv3_RS00100 at 20.200 kb on + strand, within RALBFv3_RS00100
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 17,624 - RALBFv3_RS00090 0.39 -0.4 17,856 + RALBFv3_RS00090 0.63 -0.9 17,999 - RALBFv3_RS00090 0.78 +0.2 17,999 - RALBFv3_RS00090 0.78 -0.7 18,456 + RALBFv3_RS00095 0.22 +0.2 18,456 + RALBFv3_RS00095 0.22 +0.6 19,432 + +0.1 19,843 + RALBFv3_RS00100 0.50 -0.2 19,942 + RALBFv3_RS00100 0.60 -1.2 20,050 + RALBFv3_RS00100 0.71 +0.2 20,051 - RALBFv3_RS00100 0.71 -1.9 20,051 - RALBFv3_RS00100 0.71 -1.6 20,188 + RALBFv3_RS00100 0.85 -1.8 20,200 + RALBFv3_RS00100 0.86 -0.3
Or see this region's nucleotide sequence