Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16555

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16550 and ABZR87_RS16555 are separated by 37 nucleotidesABZR87_RS16555 and ABZR87_RS16560 overlap by 4 nucleotidesABZR87_RS16560 and ABZR87_RS16565 are separated by 19 nucleotidesABZR87_RS16565 and ABZR87_RS16570 are separated by 143 nucleotides ABZR87_RS16550: ABZR87_RS16550 - acyl-CoA dehydrogenase family protein, at 62,808 to 63,983 _RS16550 ABZR87_RS16555: ABZR87_RS16555 - AMP-binding protein, at 64,021 to 65,637 _RS16555 ABZR87_RS16560: ABZR87_RS16560 - thioesterase family protein, at 65,634 to 66,062 _RS16560 ABZR87_RS16565: ABZR87_RS16565 - RidA family protein, at 66,082 to 66,474 _RS16565 ABZR87_RS16570: ABZR87_RS16570 - VOC family protein, at 66,618 to 67,469 _RS16570 Position (kb) 64 65 66Strain fitness (log2 ratio) -1 0 1 2at 63.157 kb on - strand, within ABZR87_RS16550at 63.157 kb on - strand, within ABZR87_RS16550at 63.157 kb on - strand, within ABZR87_RS16550at 63.270 kb on + strand, within ABZR87_RS16550at 63.271 kb on - strand, within ABZR87_RS16550at 63.271 kb on - strand, within ABZR87_RS16550at 63.271 kb on - strand, within ABZR87_RS16550at 63.271 kb on - strand, within ABZR87_RS16550at 63.324 kb on + strand, within ABZR87_RS16550at 63.324 kb on + strand, within ABZR87_RS16550at 63.325 kb on - strand, within ABZR87_RS16550at 64.036 kb on - strandat 64.087 kb on + strandat 64.216 kb on + strand, within ABZR87_RS16555at 64.217 kb on - strand, within ABZR87_RS16555at 64.217 kb on - strand, within ABZR87_RS16555at 64.217 kb on - strand, within ABZR87_RS16555at 64.217 kb on - strand, within ABZR87_RS16555at 64.575 kb on + strand, within ABZR87_RS16555at 64.575 kb on + strand, within ABZR87_RS16555at 64.575 kb on + strand, within ABZR87_RS16555at 64.576 kb on - strand, within ABZR87_RS16555at 64.587 kb on + strand, within ABZR87_RS16555at 64.758 kb on + strand, within ABZR87_RS16555at 64.759 kb on - strand, within ABZR87_RS16555at 64.759 kb on - strand, within ABZR87_RS16555at 64.901 kb on - strand, within ABZR87_RS16555at 65.058 kb on + strand, within ABZR87_RS16555at 65.058 kb on + strand, within ABZR87_RS16555at 65.058 kb on + strand, within ABZR87_RS16555at 65.058 kb on + strand, within ABZR87_RS16555at 65.059 kb on - strand, within ABZR87_RS16555at 65.059 kb on - strand, within ABZR87_RS16555at 65.059 kb on - strand, within ABZR87_RS16555at 65.059 kb on - strand, within ABZR87_RS16555at 65.213 kb on - strand, within ABZR87_RS16555at 65.239 kb on + strand, within ABZR87_RS16555at 65.240 kb on - strand, within ABZR87_RS16555at 65.275 kb on + strand, within ABZR87_RS16555at 65.275 kb on + strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.296 kb on + strand, within ABZR87_RS16555at 65.297 kb on - strand, within ABZR87_RS16555at 65.297 kb on - strand, within ABZR87_RS16555at 65.300 kb on + strand, within ABZR87_RS16555at 65.305 kb on + strand, within ABZR87_RS16555at 65.306 kb on - strand, within ABZR87_RS16555at 65.306 kb on - strand, within ABZR87_RS16555at 65.345 kb on - strand, within ABZR87_RS16555at 65.462 kb on + strand, within ABZR87_RS16555at 65.539 kb on + strandat 65.539 kb on + strandat 65.540 kb on - strandat 65.540 kb on - strandat 65.545 kb on + strandat 65.545 kb on + strandat 65.546 kb on - strandat 65.643 kb on + strandat 65.644 kb on - strandat 65.775 kb on + strand, within ABZR87_RS16560at 65.776 kb on - strand, within ABZR87_RS16560at 65.885 kb on - strand, within ABZR87_RS16560at 65.885 kb on - strand, within ABZR87_RS16560at 65.885 kb on - strand, within ABZR87_RS16560at 65.975 kb on + strand, within ABZR87_RS16560at 65.988 kb on - strand, within ABZR87_RS16560at 65.988 kb on - strand, within ABZR87_RS16560at 65.988 kb on - strand, within ABZR87_RS16560at 66.060 kb on + strandat 66.510 kb on + strandat 66.519 kb on - strandat 66.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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63,157 - ABZR87_RS16550 0.30 +0.2
63,157 - ABZR87_RS16550 0.30 +0.3
63,157 - ABZR87_RS16550 0.30 +0.7
63,270 + ABZR87_RS16550 0.39 -0.2
63,271 - ABZR87_RS16550 0.39 +0.6
63,271 - ABZR87_RS16550 0.39 -0.5
63,271 - ABZR87_RS16550 0.39 +1.0
63,271 - ABZR87_RS16550 0.39 +0.3
63,324 + ABZR87_RS16550 0.44 +0.5
63,324 + ABZR87_RS16550 0.44 +0.7
63,325 - ABZR87_RS16550 0.44 +0.7
64,036 - +0.1
64,087 + +0.1
64,216 + ABZR87_RS16555 0.12 +0.4
64,217 - ABZR87_RS16555 0.12 -0.2
64,217 - ABZR87_RS16555 0.12 -0.7
64,217 - ABZR87_RS16555 0.12 +0.6
64,217 - ABZR87_RS16555 0.12 +0.1
64,575 + ABZR87_RS16555 0.34 -0.2
64,575 + ABZR87_RS16555 0.34 +0.2
64,575 + ABZR87_RS16555 0.34 -0.9
64,576 - ABZR87_RS16555 0.34 +0.3
64,587 + ABZR87_RS16555 0.35 +1.2
64,758 + ABZR87_RS16555 0.46 -0.5
64,759 - ABZR87_RS16555 0.46 -0.6
64,759 - ABZR87_RS16555 0.46 +0.7
64,901 - ABZR87_RS16555 0.54 +0.0
65,058 + ABZR87_RS16555 0.64 -0.8
65,058 + ABZR87_RS16555 0.64 -0.1
65,058 + ABZR87_RS16555 0.64 +0.2
65,058 + ABZR87_RS16555 0.64 +0.0
65,059 - ABZR87_RS16555 0.64 +0.5
65,059 - ABZR87_RS16555 0.64 -0.3
65,059 - ABZR87_RS16555 0.64 -0.5
65,059 - ABZR87_RS16555 0.64 +0.5
65,213 - ABZR87_RS16555 0.74 -0.0
65,239 + ABZR87_RS16555 0.75 -0.0
65,240 - ABZR87_RS16555 0.75 +0.0
65,275 + ABZR87_RS16555 0.78 -0.3
65,275 + ABZR87_RS16555 0.78 -0.5
65,276 - ABZR87_RS16555 0.78 +0.7
65,276 - ABZR87_RS16555 0.78 +0.5
65,276 - ABZR87_RS16555 0.78 +0.7
65,276 - ABZR87_RS16555 0.78 -0.4
65,276 - ABZR87_RS16555 0.78 -0.4
65,276 - ABZR87_RS16555 0.78 -0.5
65,296 + ABZR87_RS16555 0.79 +0.3
65,297 - ABZR87_RS16555 0.79 +0.2
65,297 - ABZR87_RS16555 0.79 -0.3
65,300 + ABZR87_RS16555 0.79 +0.3
65,305 + ABZR87_RS16555 0.79 -0.2
65,306 - ABZR87_RS16555 0.79 -0.0
65,306 - ABZR87_RS16555 0.79 +1.9
65,345 - ABZR87_RS16555 0.82 +0.0
65,462 + ABZR87_RS16555 0.89 +0.9
65,539 + -0.2
65,539 + +0.5
65,540 - -0.1
65,540 - -0.4
65,545 + +1.2
65,545 + -1.0
65,546 - -0.1
65,643 + -0.5
65,644 - +1.7
65,775 + ABZR87_RS16560 0.33 -0.0
65,776 - ABZR87_RS16560 0.33 +0.5
65,885 - ABZR87_RS16560 0.59 +0.8
65,885 - ABZR87_RS16560 0.59 +0.9
65,885 - ABZR87_RS16560 0.59 +0.6
65,975 + ABZR87_RS16560 0.79 +0.6
65,988 - ABZR87_RS16560 0.83 +1.5
65,988 - ABZR87_RS16560 0.83 +0.2
65,988 - ABZR87_RS16560 0.83 +0.4
66,060 + -0.1
66,510 + -0.4
66,519 - -0.1
66,519 - -0.3

Or see this region's nucleotide sequence