Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16300

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16295 and ABZR87_RS16300 are separated by 3 nucleotidesABZR87_RS16300 and ABZR87_RS16305 overlap by 4 nucleotides ABZR87_RS16295: ABZR87_RS16295 - MFS transporter, at 6,097 to 7,437 _RS16295 ABZR87_RS16300: ABZR87_RS16300 - sensor histidine kinase, at 7,441 to 9,357 _RS16300 ABZR87_RS16305: ABZR87_RS16305 - sigma-54 dependent transcriptional regulator, at 9,354 to 10,712 _RS16305 Position (kb) 7 8 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6.472 kb on + strand, within ABZR87_RS16295at 6.472 kb on + strand, within ABZR87_RS16295at 6.472 kb on + strand, within ABZR87_RS16295at 6.472 kb on + strand, within ABZR87_RS16295at 6.473 kb on - strand, within ABZR87_RS16295at 6.473 kb on - strand, within ABZR87_RS16295at 6.473 kb on - strand, within ABZR87_RS16295at 6.473 kb on - strand, within ABZR87_RS16295at 6.551 kb on - strand, within ABZR87_RS16295at 6.568 kb on + strand, within ABZR87_RS16295at 6.568 kb on + strand, within ABZR87_RS16295at 6.568 kb on + strand, within ABZR87_RS16295at 6.568 kb on + strand, within ABZR87_RS16295at 6.568 kb on + strand, within ABZR87_RS16295at 6.569 kb on - strand, within ABZR87_RS16295at 6.569 kb on - strand, within ABZR87_RS16295at 6.607 kb on + strand, within ABZR87_RS16295at 6.607 kb on + strand, within ABZR87_RS16295at 6.608 kb on - strand, within ABZR87_RS16295at 6.622 kb on + strand, within ABZR87_RS16295at 6.622 kb on + strand, within ABZR87_RS16295at 6.622 kb on + strand, within ABZR87_RS16295at 6.623 kb on - strand, within ABZR87_RS16295at 6.910 kb on + strand, within ABZR87_RS16295at 6.910 kb on + strand, within ABZR87_RS16295at 6.910 kb on + strand, within ABZR87_RS16295at 6.910 kb on + strand, within ABZR87_RS16295at 6.911 kb on - strand, within ABZR87_RS16295at 6.911 kb on - strand, within ABZR87_RS16295at 6.916 kb on + strand, within ABZR87_RS16295at 6.917 kb on - strand, within ABZR87_RS16295at 6.917 kb on - strand, within ABZR87_RS16295at 6.925 kb on + strand, within ABZR87_RS16295at 6.925 kb on + strand, within ABZR87_RS16295at 6.925 kb on + strand, within ABZR87_RS16295at 6.925 kb on + strand, within ABZR87_RS16295at 6.926 kb on - strand, within ABZR87_RS16295at 6.926 kb on - strand, within ABZR87_RS16295at 6.926 kb on - strand, within ABZR87_RS16295at 6.926 kb on - strand, within ABZR87_RS16295at 6.926 kb on - strand, within ABZR87_RS16295at 6.926 kb on - strand, within ABZR87_RS16295at 6.926 kb on - strand, within ABZR87_RS16295at 6.926 kb on - strand, within ABZR87_RS16295at 6.926 kb on - strand, within ABZR87_RS16295at 6.926 kb on - strand, within ABZR87_RS16295at 7.090 kb on - strand, within ABZR87_RS16295at 7.189 kb on + strand, within ABZR87_RS16295at 7.190 kb on - strand, within ABZR87_RS16295at 7.264 kb on + strand, within ABZR87_RS16295at 7.264 kb on + strand, within ABZR87_RS16295at 7.265 kb on - strand, within ABZR87_RS16295at 7.274 kb on - strand, within ABZR87_RS16295at 7.303 kb on + strand, within ABZR87_RS16295at 7.303 kb on + strand, within ABZR87_RS16295at 7.303 kb on + strand, within ABZR87_RS16295at 7.304 kb on - strandat 7.304 kb on - strandat 7.304 kb on - strandat 7.304 kb on - strandat 7.304 kb on - strandat 7.348 kb on + strandat 7.348 kb on + strandat 7.348 kb on + strandat 7.348 kb on + strandat 7.348 kb on + strandat 7.349 kb on - strandat 7.349 kb on - strandat 7.349 kb on - strandat 7.349 kb on - strandat 7.349 kb on - strandat 7.354 kb on + strandat 7.354 kb on + strandat 7.354 kb on + strandat 7.354 kb on + strandat 7.354 kb on + strandat 7.354 kb on + strandat 7.354 kb on + strandat 7.355 kb on - strandat 7.355 kb on - strandat 7.390 kb on + strandat 7.390 kb on + strandat 7.390 kb on + strandat 7.390 kb on + strandat 7.390 kb on + strandat 7.390 kb on + strandat 7.391 kb on - strandat 7.391 kb on - strandat 7.391 kb on - strandat 7.556 kb on - strandat 7.576 kb on + strandat 7.577 kb on - strandat 7.622 kb on - strandat 7.654 kb on + strand, within ABZR87_RS16300at 7.759 kb on + strand, within ABZR87_RS16300at 7.759 kb on + strand, within ABZR87_RS16300at 7.759 kb on + strand, within ABZR87_RS16300at 7.760 kb on - strand, within ABZR87_RS16300at 7.760 kb on - strand, within ABZR87_RS16300at 7.813 kb on - strand, within ABZR87_RS16300at 7.813 kb on - strand, within ABZR87_RS16300at 7.813 kb on - strand, within ABZR87_RS16300at 7.876 kb on + strand, within ABZR87_RS16300at 7.876 kb on + strand, within ABZR87_RS16300at 7.891 kb on + strand, within ABZR87_RS16300at 7.892 kb on - strand, within ABZR87_RS16300at 7.892 kb on - strand, within ABZR87_RS16300at 7.892 kb on - strand, within ABZR87_RS16300at 7.930 kb on + strand, within ABZR87_RS16300at 7.930 kb on + strand, within ABZR87_RS16300at 7.931 kb on - strand, within ABZR87_RS16300at 7.931 kb on - strand, within ABZR87_RS16300at 7.963 kb on + strand, within ABZR87_RS16300at 8.067 kb on + strand, within ABZR87_RS16300at 8.067 kb on + strand, within ABZR87_RS16300at 8.106 kb on - strand, within ABZR87_RS16300at 8.129 kb on - strand, within ABZR87_RS16300at 8.188 kb on + strand, within ABZR87_RS16300at 8.189 kb on - strand, within ABZR87_RS16300at 8.574 kb on + strand, within ABZR87_RS16300at 9.170 kb on + strandat 9.170 kb on + strandat 9.170 kb on + strandat 9.170 kb on + strandat 9.170 kb on + strandat 9.171 kb on - strandat 9.171 kb on - strandat 9.171 kb on - strandat 9.171 kb on - strandat 9.171 kb on - strandat 10.080 kb on + strand, within ABZR87_RS16305at 10.081 kb on - strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.284 kb on + strand, within ABZR87_RS16305at 10.285 kb on - strand, within ABZR87_RS16305at 10.285 kb on - strand, within ABZR87_RS16305at 10.285 kb on - strand, within ABZR87_RS16305at 10.285 kb on - strand, within ABZR87_RS16305at 10.288 kb on - strand, within ABZR87_RS16305at 10.288 kb on - strand, within ABZR87_RS16305at 10.304 kb on - strand, within ABZR87_RS16305

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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6,472 + ABZR87_RS16295 0.28 -0.2
6,472 + ABZR87_RS16295 0.28 +1.2
6,472 + ABZR87_RS16295 0.28 -0.4
6,472 + ABZR87_RS16295 0.28 +1.1
6,473 - ABZR87_RS16295 0.28 +0.1
6,473 - ABZR87_RS16295 0.28 +0.1
6,473 - ABZR87_RS16295 0.28 -0.9
6,473 - ABZR87_RS16295 0.28 -1.3
6,551 - ABZR87_RS16295 0.34 +0.2
6,568 + ABZR87_RS16295 0.35 -0.4
6,568 + ABZR87_RS16295 0.35 +0.1
6,568 + ABZR87_RS16295 0.35 +0.6
6,568 + ABZR87_RS16295 0.35 -1.5
6,568 + ABZR87_RS16295 0.35 -3.4
6,569 - ABZR87_RS16295 0.35 -1.3
6,569 - ABZR87_RS16295 0.35 -0.5
6,607 + ABZR87_RS16295 0.38 -0.9
6,607 + ABZR87_RS16295 0.38 -0.3
6,608 - ABZR87_RS16295 0.38 -0.5
6,622 + ABZR87_RS16295 0.39 -0.3
6,622 + ABZR87_RS16295 0.39 +0.6
6,622 + ABZR87_RS16295 0.39 +0.8
6,623 - ABZR87_RS16295 0.39 +0.7
6,910 + ABZR87_RS16295 0.61 -2.4
6,910 + ABZR87_RS16295 0.61 +2.4
6,910 + ABZR87_RS16295 0.61 +0.7
6,910 + ABZR87_RS16295 0.61 -0.8
6,911 - ABZR87_RS16295 0.61 +0.2
6,911 - ABZR87_RS16295 0.61 -1.3
6,916 + ABZR87_RS16295 0.61 -1.4
6,917 - ABZR87_RS16295 0.61 -0.1
6,917 - ABZR87_RS16295 0.61 +0.0
6,925 + ABZR87_RS16295 0.62 +0.4
6,925 + ABZR87_RS16295 0.62 +0.7
6,925 + ABZR87_RS16295 0.62 -0.3
6,925 + ABZR87_RS16295 0.62 +0.4
6,926 - ABZR87_RS16295 0.62 -0.3
6,926 - ABZR87_RS16295 0.62 +0.3
6,926 - ABZR87_RS16295 0.62 -1.3
6,926 - ABZR87_RS16295 0.62 +0.7
6,926 - ABZR87_RS16295 0.62 +0.1
6,926 - ABZR87_RS16295 0.62 +0.3
6,926 - ABZR87_RS16295 0.62 +0.3
6,926 - ABZR87_RS16295 0.62 -0.0
6,926 - ABZR87_RS16295 0.62 +0.5
6,926 - ABZR87_RS16295 0.62 +0.5
7,090 - ABZR87_RS16295 0.74 -0.4
7,189 + ABZR87_RS16295 0.81 +0.0
7,190 - ABZR87_RS16295 0.82 +2.0
7,264 + ABZR87_RS16295 0.87 +0.7
7,264 + ABZR87_RS16295 0.87 -0.0
7,265 - ABZR87_RS16295 0.87 +0.3
7,274 - ABZR87_RS16295 0.88 +0.1
7,303 + ABZR87_RS16295 0.90 -0.3
7,303 + ABZR87_RS16295 0.90 -0.8
7,303 + ABZR87_RS16295 0.90 +0.5
7,304 - -0.9
7,304 - +0.8
7,304 - -0.3
7,304 - -0.7
7,304 - -0.4
7,348 + +1.2
7,348 + +0.1
7,348 + -0.8
7,348 + -0.6
7,348 + -0.7
7,349 - -0.3
7,349 - -0.2
7,349 - -0.1
7,349 - +0.0
7,349 - -0.1
7,354 + +0.2
7,354 + -0.0
7,354 + -1.0
7,354 + -0.7
7,354 + -1.3
7,354 + +0.6
7,354 + -0.7
7,355 - -0.4
7,355 - +0.2
7,390 + -0.5
7,390 + -1.2
7,390 + -0.7
7,390 + +0.5
7,390 + -1.2
7,390 + -0.3
7,391 - +0.0
7,391 - -0.5
7,391 - -0.7
7,556 - -0.2
7,576 + -0.6
7,577 - +1.7
7,622 - -0.7
7,654 + ABZR87_RS16300 0.11 -0.7
7,759 + ABZR87_RS16300 0.17 -0.6
7,759 + ABZR87_RS16300 0.17 +0.2
7,759 + ABZR87_RS16300 0.17 +0.5
7,760 - ABZR87_RS16300 0.17 -0.4
7,760 - ABZR87_RS16300 0.17 -0.0
7,813 - ABZR87_RS16300 0.19 -1.2
7,813 - ABZR87_RS16300 0.19 +1.0
7,813 - ABZR87_RS16300 0.19 -0.2
7,876 + ABZR87_RS16300 0.23 -1.8
7,876 + ABZR87_RS16300 0.23 -1.4
7,891 + ABZR87_RS16300 0.23 -0.3
7,892 - ABZR87_RS16300 0.24 +1.2
7,892 - ABZR87_RS16300 0.24 -0.3
7,892 - ABZR87_RS16300 0.24 -0.0
7,930 + ABZR87_RS16300 0.26 -1.8
7,930 + ABZR87_RS16300 0.26 +0.1
7,931 - ABZR87_RS16300 0.26 +0.3
7,931 - ABZR87_RS16300 0.26 +0.4
7,963 + ABZR87_RS16300 0.27 +0.0
8,067 + ABZR87_RS16300 0.33 -1.8
8,067 + ABZR87_RS16300 0.33 -0.8
8,106 - ABZR87_RS16300 0.35 +1.7
8,129 - ABZR87_RS16300 0.36 +0.3
8,188 + ABZR87_RS16300 0.39 -0.3
8,189 - ABZR87_RS16300 0.39 -0.9
8,574 + ABZR87_RS16300 0.59 -1.3
9,170 + -0.5
9,170 + -0.3
9,170 + -0.3
9,170 + +0.4
9,170 + -2.1
9,171 - -0.4
9,171 - +0.6
9,171 - +1.0
9,171 - -0.4
9,171 - -0.1
10,080 + ABZR87_RS16305 0.53 -0.9
10,081 - ABZR87_RS16305 0.53 +0.3
10,284 + ABZR87_RS16305 0.68 +0.9
10,284 + ABZR87_RS16305 0.68 +1.0
10,284 + ABZR87_RS16305 0.68 +0.3
10,284 + ABZR87_RS16305 0.68 -0.3
10,284 + ABZR87_RS16305 0.68 +0.1
10,284 + ABZR87_RS16305 0.68 -0.8
10,284 + ABZR87_RS16305 0.68 -0.6
10,285 - ABZR87_RS16305 0.69 +0.5
10,285 - ABZR87_RS16305 0.69 -1.0
10,285 - ABZR87_RS16305 0.69 -0.2
10,285 - ABZR87_RS16305 0.69 -1.2
10,288 - ABZR87_RS16305 0.69 -0.2
10,288 - ABZR87_RS16305 0.69 +1.0
10,304 - ABZR87_RS16305 0.70 +0.3

Or see this region's nucleotide sequence