Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09080

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09070 and ABZR87_RS09075 are separated by 62 nucleotidesABZR87_RS09075 and ABZR87_RS09080 overlap by 4 nucleotidesABZR87_RS09080 and ABZR87_RS09085 are separated by 138 nucleotidesABZR87_RS09085 and ABZR87_RS09090 are separated by 279 nucleotides ABZR87_RS09070: ABZR87_RS09070 - hypothetical protein, at 1,921,702 to 1,922,067 _RS09070 ABZR87_RS09075: ABZR87_RS09075 - DUF3318 domain-containing protein, at 1,922,130 to 1,922,666 _RS09075 ABZR87_RS09080: ABZR87_RS09080 - phage holin family protein, at 1,922,663 to 1,923,040 _RS09080 ABZR87_RS09085: ABZR87_RS09085 - DUF883 family protein, at 1,923,179 to 1,923,505 _RS09085 ABZR87_RS09090: ABZR87_RS09090 - peroxiredoxin, at 1,923,785 to 1,924,423 _RS09090 Position (kb) 1922 1923 1924Strain fitness (log2 ratio) -2 -1 0 1 2at 1921.667 kb on + strandat 1921.667 kb on + strandat 1921.668 kb on - strandat 1921.668 kb on - strandat 1921.668 kb on - strandat 1921.678 kb on + strandat 1921.718 kb on + strandat 1921.718 kb on + strandat 1921.719 kb on - strandat 1921.719 kb on - strandat 1921.719 kb on - strandat 1921.806 kb on + strand, within ABZR87_RS09070at 1921.806 kb on + strand, within ABZR87_RS09070at 1921.807 kb on - strand, within ABZR87_RS09070at 1921.866 kb on + strand, within ABZR87_RS09070at 1921.866 kb on + strand, within ABZR87_RS09070at 1921.867 kb on - strand, within ABZR87_RS09070at 1922.314 kb on + strand, within ABZR87_RS09075at 1922.315 kb on - strand, within ABZR87_RS09075at 1922.315 kb on - strand, within ABZR87_RS09075at 1922.315 kb on - strand, within ABZR87_RS09075at 1922.495 kb on - strand, within ABZR87_RS09075at 1922.580 kb on + strand, within ABZR87_RS09075at 1922.581 kb on - strand, within ABZR87_RS09075at 1922.581 kb on - strand, within ABZR87_RS09075at 1922.782 kb on - strand, within ABZR87_RS09080at 1922.817 kb on + strand, within ABZR87_RS09080at 1922.817 kb on + strand, within ABZR87_RS09080at 1922.818 kb on - strand, within ABZR87_RS09080at 1922.818 kb on - strand, within ABZR87_RS09080at 1922.818 kb on - strand, within ABZR87_RS09080at 1922.821 kb on + strand, within ABZR87_RS09080at 1922.822 kb on - strand, within ABZR87_RS09080at 1923.180 kb on + strandat 1923.261 kb on + strand, within ABZR87_RS09085at 1923.261 kb on + strand, within ABZR87_RS09085at 1923.261 kb on + strand, within ABZR87_RS09085at 1923.262 kb on - strand, within ABZR87_RS09085at 1923.262 kb on - strand, within ABZR87_RS09085at 1923.262 kb on - strand, within ABZR87_RS09085at 1923.262 kb on - strand, within ABZR87_RS09085at 1923.262 kb on - strand, within ABZR87_RS09085at 1923.262 kb on - strand, within ABZR87_RS09085at 1923.262 kb on - strand, within ABZR87_RS09085at 1923.262 kb on - strand, within ABZR87_RS09085at 1923.434 kb on + strand, within ABZR87_RS09085at 1923.434 kb on + strand, within ABZR87_RS09085at 1923.434 kb on + strand, within ABZR87_RS09085at 1923.434 kb on + strand, within ABZR87_RS09085at 1923.435 kb on - strand, within ABZR87_RS09085at 1923.435 kb on - strand, within ABZR87_RS09085at 1923.435 kb on - strand, within ABZR87_RS09085at 1923.467 kb on - strand, within ABZR87_RS09085at 1923.528 kb on - strandat 1923.528 kb on - strandat 1923.542 kb on + strandat 1923.543 kb on - strandat 1923.543 kb on - strandat 1923.543 kb on - strandat 1923.557 kb on - strandat 1923.563 kb on + strandat 1923.564 kb on - strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.568 kb on + strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.569 kb on - strandat 1923.720 kb on + strandat 1923.751 kb on + strandat 1923.751 kb on + strandat 1923.752 kb on - strandat 1923.754 kb on - strandat 1923.772 kb on + strandat 1923.772 kb on + strandat 1923.772 kb on + strandat 1923.772 kb on + strandat 1923.772 kb on + strandat 1923.773 kb on - strandat 1923.773 kb on - strandat 1923.773 kb on - strandat 1923.792 kb on + strandat 1923.792 kb on + strandat 1923.792 kb on + strandat 1923.792 kb on + strandat 1923.793 kb on - strandat 1923.905 kb on + strand, within ABZR87_RS09090at 1923.906 kb on - strand, within ABZR87_RS09090at 1923.906 kb on - strand, within ABZR87_RS09090

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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1,921,667 + +0.0
1,921,667 + -1.8
1,921,668 - -1.6
1,921,668 - +0.5
1,921,668 - -2.6
1,921,678 + -0.7
1,921,718 + +0.4
1,921,718 + +0.9
1,921,719 - +1.0
1,921,719 - +0.3
1,921,719 - -0.1
1,921,806 + ABZR87_RS09070 0.28 -0.1
1,921,806 + ABZR87_RS09070 0.28 +0.9
1,921,807 - ABZR87_RS09070 0.29 +0.2
1,921,866 + ABZR87_RS09070 0.45 -0.6
1,921,866 + ABZR87_RS09070 0.45 -0.1
1,921,867 - ABZR87_RS09070 0.45 +0.0
1,922,314 + ABZR87_RS09075 0.34 -0.5
1,922,315 - ABZR87_RS09075 0.34 -1.1
1,922,315 - ABZR87_RS09075 0.34 -0.4
1,922,315 - ABZR87_RS09075 0.34 -0.2
1,922,495 - ABZR87_RS09075 0.68 -0.5
1,922,580 + ABZR87_RS09075 0.84 -0.6
1,922,581 - ABZR87_RS09075 0.84 +0.8
1,922,581 - ABZR87_RS09075 0.84 -0.9
1,922,782 - ABZR87_RS09080 0.31 -1.7
1,922,817 + ABZR87_RS09080 0.41 -1.1
1,922,817 + ABZR87_RS09080 0.41 -2.4
1,922,818 - ABZR87_RS09080 0.41 -0.7
1,922,818 - ABZR87_RS09080 0.41 -1.6
1,922,818 - ABZR87_RS09080 0.41 -2.3
1,922,821 + ABZR87_RS09080 0.42 -1.4
1,922,822 - ABZR87_RS09080 0.42 -0.7
1,923,180 + -0.0
1,923,261 + ABZR87_RS09085 0.25 -1.4
1,923,261 + ABZR87_RS09085 0.25 -2.3
1,923,261 + ABZR87_RS09085 0.25 -1.7
1,923,262 - ABZR87_RS09085 0.25 -1.7
1,923,262 - ABZR87_RS09085 0.25 +0.2
1,923,262 - ABZR87_RS09085 0.25 -1.0
1,923,262 - ABZR87_RS09085 0.25 -0.5
1,923,262 - ABZR87_RS09085 0.25 +0.8
1,923,262 - ABZR87_RS09085 0.25 -0.1
1,923,262 - ABZR87_RS09085 0.25 -1.0
1,923,262 - ABZR87_RS09085 0.25 -1.1
1,923,434 + ABZR87_RS09085 0.78 -0.7
1,923,434 + ABZR87_RS09085 0.78 -1.4
1,923,434 + ABZR87_RS09085 0.78 -0.8
1,923,434 + ABZR87_RS09085 0.78 -0.0
1,923,435 - ABZR87_RS09085 0.78 -1.8
1,923,435 - ABZR87_RS09085 0.78 -2.0
1,923,435 - ABZR87_RS09085 0.78 -1.0
1,923,467 - ABZR87_RS09085 0.88 -0.9
1,923,528 - +0.2
1,923,528 - -0.1
1,923,542 + -1.5
1,923,543 - -1.1
1,923,543 - -0.2
1,923,543 - -0.2
1,923,557 - +0.1
1,923,563 + -1.0
1,923,564 - +0.1
1,923,568 + -0.2
1,923,568 + -1.0
1,923,568 + -1.2
1,923,568 + -0.1
1,923,568 + -0.5
1,923,568 + -0.0
1,923,568 + -1.8
1,923,568 + -0.9
1,923,568 + -0.5
1,923,568 + -1.6
1,923,568 + +0.1
1,923,568 + -2.4
1,923,568 + -0.0
1,923,568 + +0.6
1,923,568 + +0.1
1,923,568 + -0.5
1,923,568 + -0.2
1,923,569 - +0.4
1,923,569 - -0.2
1,923,569 - +1.8
1,923,569 - -0.2
1,923,569 - +1.0
1,923,569 - +0.7
1,923,569 - +0.3
1,923,569 - +0.3
1,923,569 - -1.9
1,923,569 - +1.3
1,923,569 - -0.4
1,923,569 - +0.1
1,923,569 - +0.5
1,923,569 - -0.3
1,923,569 - +0.3
1,923,569 - -0.2
1,923,569 - -0.3
1,923,569 - -0.4
1,923,569 - +0.3
1,923,569 - -0.2
1,923,569 - -0.0
1,923,569 - -1.1
1,923,720 + -0.5
1,923,751 + -1.0
1,923,751 + -1.6
1,923,752 - -0.1
1,923,754 - +0.5
1,923,772 + -0.2
1,923,772 + -1.5
1,923,772 + -0.3
1,923,772 + +0.1
1,923,772 + -1.0
1,923,773 - -0.4
1,923,773 - -1.8
1,923,773 - +0.1
1,923,792 + -0.7
1,923,792 + -1.4
1,923,792 + -0.2
1,923,792 + +0.2
1,923,793 - -0.2
1,923,905 + ABZR87_RS09090 0.19 -2.1
1,923,906 - ABZR87_RS09090 0.19 +0.1
1,923,906 - ABZR87_RS09090 0.19 -1.0

Or see this region's nucleotide sequence