Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06280

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06270 and ABZR87_RS06275 overlap by 4 nucleotidesABZR87_RS06275 and ABZR87_RS06280 are separated by 29 nucleotidesABZR87_RS06280 and ABZR87_RS06285 are separated by 28 nucleotidesABZR87_RS06285 and ABZR87_RS06290 overlap by 1 nucleotides ABZR87_RS06270: ABZR87_RS06270 - enoyl-CoA hydratase/isomerase family protein, at 1,339,700 to 1,340,494 _RS06270 ABZR87_RS06275: ABZR87_RS06275 - prolyl oligopeptidase family serine peptidase, at 1,340,491 to 1,341,435 _RS06275 ABZR87_RS06280: ABZR87_RS06280 - carboxyl transferase domain-containing protein, at 1,341,465 to 1,343,072 _RS06280 ABZR87_RS06285: ABZR87_RS06285 - YchJ family protein, at 1,343,101 to 1,343,541 _RS06285 ABZR87_RS06290: ABZR87_RS06290 - HAD family phosphatase, at 1,343,541 to 1,344,239 _RS06290 Position (kb) 1341 1342 1343 1344Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1340.729 kb on + strand, within ABZR87_RS06275at 1340.729 kb on + strand, within ABZR87_RS06275at 1340.768 kb on + strand, within ABZR87_RS06275at 1340.769 kb on - strand, within ABZR87_RS06275at 1340.769 kb on - strand, within ABZR87_RS06275at 1340.769 kb on - strand, within ABZR87_RS06275at 1340.769 kb on - strand, within ABZR87_RS06275at 1340.769 kb on - strand, within ABZR87_RS06275at 1340.769 kb on - strand, within ABZR87_RS06275at 1340.786 kb on + strand, within ABZR87_RS06275at 1340.786 kb on + strand, within ABZR87_RS06275at 1340.823 kb on - strand, within ABZR87_RS06275at 1340.823 kb on - strand, within ABZR87_RS06275at 1340.918 kb on + strand, within ABZR87_RS06275at 1340.929 kb on - strand, within ABZR87_RS06275at 1340.929 kb on - strand, within ABZR87_RS06275at 1340.996 kb on + strand, within ABZR87_RS06275at 1340.996 kb on + strand, within ABZR87_RS06275at 1340.997 kb on - strand, within ABZR87_RS06275at 1341.014 kb on + strand, within ABZR87_RS06275at 1341.014 kb on + strand, within ABZR87_RS06275at 1341.014 kb on + strand, within ABZR87_RS06275at 1341.014 kb on + strand, within ABZR87_RS06275at 1341.015 kb on - strand, within ABZR87_RS06275at 1341.015 kb on - strand, within ABZR87_RS06275at 1341.015 kb on - strand, within ABZR87_RS06275at 1341.015 kb on - strand, within ABZR87_RS06275at 1341.086 kb on + strand, within ABZR87_RS06275at 1341.086 kb on + strand, within ABZR87_RS06275at 1341.086 kb on + strand, within ABZR87_RS06275at 1341.087 kb on - strand, within ABZR87_RS06275at 1341.137 kb on + strand, within ABZR87_RS06275at 1341.174 kb on - strand, within ABZR87_RS06275at 1341.263 kb on + strand, within ABZR87_RS06275at 1341.264 kb on - strand, within ABZR87_RS06275at 1341.466 kb on + strandat 1341.466 kb on + strandat 1341.466 kb on + strandat 1341.466 kb on + strandat 1341.466 kb on + strandat 1341.467 kb on - strandat 1341.467 kb on - strandat 1341.467 kb on - strandat 1341.467 kb on - strandat 1341.595 kb on + strandat 1341.596 kb on - strandat 1341.598 kb on + strandat 1341.598 kb on + strandat 1341.598 kb on + strandat 1341.599 kb on - strandat 1341.599 kb on - strandat 1341.619 kb on + strandat 1341.619 kb on + strandat 1341.620 kb on - strandat 1341.620 kb on - strandat 1341.808 kb on + strand, within ABZR87_RS06280at 1341.808 kb on + strand, within ABZR87_RS06280at 1341.809 kb on - strand, within ABZR87_RS06280at 1342.204 kb on + strand, within ABZR87_RS06280at 1342.205 kb on - strand, within ABZR87_RS06280at 1342.222 kb on + strand, within ABZR87_RS06280at 1342.334 kb on - strand, within ABZR87_RS06280at 1342.334 kb on - strand, within ABZR87_RS06280at 1342.492 kb on + strand, within ABZR87_RS06280at 1342.492 kb on + strand, within ABZR87_RS06280at 1342.493 kb on - strand, within ABZR87_RS06280at 1342.493 kb on - strand, within ABZR87_RS06280at 1342.570 kb on + strand, within ABZR87_RS06280at 1342.570 kb on + strand, within ABZR87_RS06280at 1342.570 kb on + strand, within ABZR87_RS06280at 1342.571 kb on - strand, within ABZR87_RS06280at 1342.571 kb on - strand, within ABZR87_RS06280at 1342.571 kb on - strand, within ABZR87_RS06280at 1342.651 kb on + strand, within ABZR87_RS06280at 1342.651 kb on + strand, within ABZR87_RS06280at 1342.652 kb on - strand, within ABZR87_RS06280at 1342.652 kb on - strand, within ABZR87_RS06280at 1342.721 kb on - strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.724 kb on - strand, within ABZR87_RS06280at 1342.724 kb on - strand, within ABZR87_RS06280at 1342.724 kb on - strand, within ABZR87_RS06280at 1342.828 kb on + strand, within ABZR87_RS06280at 1342.828 kb on + strand, within ABZR87_RS06280at 1342.829 kb on - strand, within ABZR87_RS06280at 1342.829 kb on - strand, within ABZR87_RS06280at 1342.829 kb on - strand, within ABZR87_RS06280at 1343.062 kb on - strandat 1343.062 kb on - strandat 1343.127 kb on - strandat 1343.372 kb on + strand, within ABZR87_RS06285at 1343.372 kb on + strand, within ABZR87_RS06285at 1343.373 kb on - strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.403 kb on - strand, within ABZR87_RS06285at 1343.477 kb on + strand, within ABZR87_RS06285at 1343.641 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.920 kb on + strand, within ABZR87_RS06290

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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1,340,729 + ABZR87_RS06275 0.25 -1.9
1,340,729 + ABZR87_RS06275 0.25 +0.1
1,340,768 + ABZR87_RS06275 0.29 +0.3
1,340,769 - ABZR87_RS06275 0.29 +0.3
1,340,769 - ABZR87_RS06275 0.29 +1.1
1,340,769 - ABZR87_RS06275 0.29 -1.0
1,340,769 - ABZR87_RS06275 0.29 -0.6
1,340,769 - ABZR87_RS06275 0.29 +0.4
1,340,769 - ABZR87_RS06275 0.29 -0.3
1,340,786 + ABZR87_RS06275 0.31 -0.2
1,340,786 + ABZR87_RS06275 0.31 +0.4
1,340,823 - ABZR87_RS06275 0.35 -1.6
1,340,823 - ABZR87_RS06275 0.35 -1.1
1,340,918 + ABZR87_RS06275 0.45 -1.3
1,340,929 - ABZR87_RS06275 0.46 -1.4
1,340,929 - ABZR87_RS06275 0.46 -0.9
1,340,996 + ABZR87_RS06275 0.53 -0.7
1,340,996 + ABZR87_RS06275 0.53 -0.1
1,340,997 - ABZR87_RS06275 0.54 -0.1
1,341,014 + ABZR87_RS06275 0.55 -1.1
1,341,014 + ABZR87_RS06275 0.55 -1.8
1,341,014 + ABZR87_RS06275 0.55 +0.1
1,341,014 + ABZR87_RS06275 0.55 +3.3
1,341,015 - ABZR87_RS06275 0.55 -1.7
1,341,015 - ABZR87_RS06275 0.55 +0.4
1,341,015 - ABZR87_RS06275 0.55 -1.3
1,341,015 - ABZR87_RS06275 0.55 -1.8
1,341,086 + ABZR87_RS06275 0.63 -1.2
1,341,086 + ABZR87_RS06275 0.63 +0.0
1,341,086 + ABZR87_RS06275 0.63 -0.8
1,341,087 - ABZR87_RS06275 0.63 +0.0
1,341,137 + ABZR87_RS06275 0.68 -0.5
1,341,174 - ABZR87_RS06275 0.72 -0.7
1,341,263 + ABZR87_RS06275 0.82 -0.2
1,341,264 - ABZR87_RS06275 0.82 -1.4
1,341,466 + +0.1
1,341,466 + +0.2
1,341,466 + -1.2
1,341,466 + -0.5
1,341,466 + +0.2
1,341,467 - +1.1
1,341,467 - -0.0
1,341,467 - +0.1
1,341,467 - +0.1
1,341,595 + +0.5
1,341,596 - +0.8
1,341,598 + -1.9
1,341,598 + -0.9
1,341,598 + -1.4
1,341,599 - -3.2
1,341,599 - +0.3
1,341,619 + +1.0
1,341,619 + +2.3
1,341,620 - -1.6
1,341,620 - +0.4
1,341,808 + ABZR87_RS06280 0.21 -0.1
1,341,808 + ABZR87_RS06280 0.21 -0.1
1,341,809 - ABZR87_RS06280 0.21 -2.0
1,342,204 + ABZR87_RS06280 0.46 -0.1
1,342,205 - ABZR87_RS06280 0.46 -0.2
1,342,222 + ABZR87_RS06280 0.47 +0.9
1,342,334 - ABZR87_RS06280 0.54 -2.2
1,342,334 - ABZR87_RS06280 0.54 -1.5
1,342,492 + ABZR87_RS06280 0.64 -1.4
1,342,492 + ABZR87_RS06280 0.64 -1.4
1,342,493 - ABZR87_RS06280 0.64 +0.0
1,342,493 - ABZR87_RS06280 0.64 -0.8
1,342,570 + ABZR87_RS06280 0.69 +2.0
1,342,570 + ABZR87_RS06280 0.69 -2.9
1,342,570 + ABZR87_RS06280 0.69 +0.0
1,342,571 - ABZR87_RS06280 0.69 -0.2
1,342,571 - ABZR87_RS06280 0.69 +1.1
1,342,571 - ABZR87_RS06280 0.69 +0.7
1,342,651 + ABZR87_RS06280 0.74 -1.0
1,342,651 + ABZR87_RS06280 0.74 -0.5
1,342,652 - ABZR87_RS06280 0.74 -0.1
1,342,652 - ABZR87_RS06280 0.74 +0.3
1,342,721 - ABZR87_RS06280 0.78 -1.1
1,342,723 + ABZR87_RS06280 0.78 +0.1
1,342,723 + ABZR87_RS06280 0.78 +1.9
1,342,723 + ABZR87_RS06280 0.78 -0.7
1,342,723 + ABZR87_RS06280 0.78 -0.4
1,342,723 + ABZR87_RS06280 0.78 -2.4
1,342,723 + ABZR87_RS06280 0.78 +0.3
1,342,723 + ABZR87_RS06280 0.78 -0.7
1,342,723 + ABZR87_RS06280 0.78 -0.3
1,342,724 - ABZR87_RS06280 0.78 -0.7
1,342,724 - ABZR87_RS06280 0.78 -0.1
1,342,724 - ABZR87_RS06280 0.78 +0.5
1,342,828 + ABZR87_RS06280 0.85 -1.3
1,342,828 + ABZR87_RS06280 0.85 -1.1
1,342,829 - ABZR87_RS06280 0.85 +1.3
1,342,829 - ABZR87_RS06280 0.85 +0.9
1,342,829 - ABZR87_RS06280 0.85 -1.6
1,343,062 - -1.2
1,343,062 - -0.2
1,343,127 - -1.3
1,343,372 + ABZR87_RS06285 0.61 -0.7
1,343,372 + ABZR87_RS06285 0.61 -0.3
1,343,373 - ABZR87_RS06285 0.62 +0.5
1,343,393 + ABZR87_RS06285 0.66 -1.1
1,343,393 + ABZR87_RS06285 0.66 -0.8
1,343,393 + ABZR87_RS06285 0.66 -0.3
1,343,393 + ABZR87_RS06285 0.66 -0.2
1,343,393 + ABZR87_RS06285 0.66 +0.3
1,343,394 - ABZR87_RS06285 0.66 -0.9
1,343,394 - ABZR87_RS06285 0.66 +0.2
1,343,394 - ABZR87_RS06285 0.66 -0.3
1,343,394 - ABZR87_RS06285 0.66 +0.5
1,343,394 - ABZR87_RS06285 0.66 +0.1
1,343,403 - ABZR87_RS06285 0.68 +0.4
1,343,477 + ABZR87_RS06285 0.85 +0.8
1,343,641 + ABZR87_RS06290 0.14 -0.2
1,343,752 + ABZR87_RS06290 0.30 +0.3
1,343,752 + ABZR87_RS06290 0.30 -0.8
1,343,752 + ABZR87_RS06290 0.30 +0.4
1,343,752 + ABZR87_RS06290 0.30 +0.5
1,343,752 + ABZR87_RS06290 0.30 -0.2
1,343,753 - ABZR87_RS06290 0.30 +0.4
1,343,753 - ABZR87_RS06290 0.30 +0.9
1,343,753 - ABZR87_RS06290 0.30 -0.8
1,343,753 - ABZR87_RS06290 0.30 +0.3
1,343,753 - ABZR87_RS06290 0.30 +0.3
1,343,920 + ABZR87_RS06290 0.54 +1.5

Or see this region's nucleotide sequence