Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02625

Experiment: Sebacic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS02620 and ABZR87_RS02625 are separated by 452 nucleotidesABZR87_RS02625 and ABZR87_RS02630 are separated by 72 nucleotidesABZR87_RS02630 and ABZR87_RS02635 are separated by 138 nucleotidesABZR87_RS02635 and ABZR87_RS02640 are separated by 64 nucleotides ABZR87_RS02620: ABZR87_RS02620 - type IV pilus biogenesis protein PilM, at 556,614 to 557,684 _RS02620 ABZR87_RS02625: ABZR87_RS02625 - penicillin-binding protein 1A, at 558,137 to 560,551 _RS02625 ABZR87_RS02630: ABZR87_RS02630 - iron donor protein CyaY, at 560,624 to 560,968 _RS02630 ABZR87_RS02635: ABZR87_RS02635 - lipoprotein, at 561,107 to 561,340 _RS02635 ABZR87_RS02640: ABZR87_RS02640 - diaminopimelate decarboxylase, at 561,405 to 562,664 _RS02640 Position (kb) 558 559 560 561Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 557.314 kb on + strand, within ABZR87_RS02620at 557.314 kb on + strand, within ABZR87_RS02620at 557.314 kb on + strand, within ABZR87_RS02620at 557.314 kb on + strand, within ABZR87_RS02620at 557.314 kb on + strand, within ABZR87_RS02620at 557.315 kb on - strand, within ABZR87_RS02620at 557.315 kb on - strand, within ABZR87_RS02620at 557.315 kb on - strand, within ABZR87_RS02620at 557.315 kb on - strand, within ABZR87_RS02620at 557.315 kb on - strand, within ABZR87_RS02620at 557.520 kb on - strand, within ABZR87_RS02620at 557.645 kb on + strandat 557.645 kb on + strandat 557.649 kb on + strandat 557.650 kb on - strandat 557.650 kb on - strandat 557.660 kb on + strandat 557.717 kb on + strandat 557.717 kb on + strandat 557.718 kb on - strandat 557.764 kb on + strandat 557.764 kb on + strandat 557.773 kb on + strandat 557.773 kb on + strandat 557.773 kb on + strandat 557.773 kb on + strandat 557.774 kb on - strandat 557.774 kb on - strandat 557.805 kb on + strandat 557.925 kb on + strandat 557.925 kb on + strandat 557.926 kb on - strandat 557.926 kb on - strandat 557.926 kb on - strandat 557.932 kb on - strandat 557.982 kb on + strandat 557.983 kb on - strandat 557.983 kb on - strandat 557.983 kb on - strandat 558.045 kb on + strandat 558.045 kb on + strandat 558.045 kb on + strandat 558.045 kb on + strandat 558.045 kb on + strandat 558.045 kb on + strandat 558.046 kb on - strandat 558.046 kb on - strandat 558.046 kb on - strandat 558.046 kb on - strandat 558.055 kb on + strandat 558.055 kb on + strandat 558.055 kb on + strandat 558.055 kb on + strandat 558.056 kb on - strandat 558.056 kb on - strandat 558.056 kb on - strandat 558.056 kb on - strandat 558.056 kb on - strandat 558.092 kb on + strandat 558.092 kb on + strandat 558.092 kb on + strandat 558.092 kb on + strandat 558.092 kb on + strandat 558.092 kb on + strandat 558.092 kb on + strandat 558.093 kb on - strandat 558.093 kb on - strandat 558.093 kb on - strandat 558.094 kb on + strandat 558.135 kb on + strandat 558.135 kb on + strandat 560.384 kb on + strandat 560.385 kb on - strandat 560.385 kb on - strandat 560.393 kb on + strandat 560.394 kb on - strandat 560.670 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.845 kb on + strand, within ABZR87_RS02630at 560.845 kb on + strand, within ABZR87_RS02630at 560.971 kb on + strandat 560.971 kb on + strandat 560.971 kb on + strandat 560.971 kb on + strandat 560.971 kb on + strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 561.047 kb on + strandat 561.373 kb on + strandat 561.374 kb on - strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.501 kb on + strandat 561.501 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.529 kb on - strandat 561.537 kb on + strand, within ABZR87_RS02640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
remove
557,314 + ABZR87_RS02620 0.65 -0.2
557,314 + ABZR87_RS02620 0.65 -1.7
557,314 + ABZR87_RS02620 0.65 -0.1
557,314 + ABZR87_RS02620 0.65 -0.5
557,314 + ABZR87_RS02620 0.65 +0.2
557,315 - ABZR87_RS02620 0.65 +0.2
557,315 - ABZR87_RS02620 0.65 +0.5
557,315 - ABZR87_RS02620 0.65 -1.4
557,315 - ABZR87_RS02620 0.65 +0.9
557,315 - ABZR87_RS02620 0.65 -0.4
557,520 - ABZR87_RS02620 0.85 -0.8
557,645 + +0.8
557,645 + -0.4
557,649 + -0.4
557,650 - +0.7
557,650 - -0.3
557,660 + -0.5
557,717 + +2.5
557,717 + +0.0
557,718 - +0.3
557,764 + -0.8
557,764 + -1.1
557,773 + -0.2
557,773 + +0.2
557,773 + +0.4
557,773 + -0.4
557,774 - +0.6
557,774 - -0.5
557,805 + -0.4
557,925 + +0.7
557,925 + +0.1
557,926 - -1.4
557,926 - +0.7
557,926 - -0.2
557,932 - +0.1
557,982 + +0.1
557,983 - +0.1
557,983 - +0.6
557,983 - -0.3
558,045 + +2.1
558,045 + -0.6
558,045 + -0.1
558,045 + +0.2
558,045 + -0.4
558,045 + -0.3
558,046 - -1.1
558,046 - -2.0
558,046 - +1.4
558,046 - -2.0
558,055 + +0.5
558,055 + +0.5
558,055 + +0.3
558,055 + +0.7
558,056 - -1.0
558,056 - -2.1
558,056 - -0.1
558,056 - -0.7
558,056 - +1.6
558,092 + +0.6
558,092 + +0.4
558,092 + +1.0
558,092 + +0.9
558,092 + +2.0
558,092 + +0.5
558,092 + +1.1
558,093 - -0.0
558,093 - -0.5
558,093 - +1.2
558,094 + +0.6
558,135 + -4.0
558,135 + -1.0
560,384 + -0.8
560,385 - -0.9
560,385 - -0.9
560,393 + +0.5
560,394 - +0.3
560,670 + ABZR87_RS02630 0.13 -3.6
560,688 + ABZR87_RS02630 0.19 -0.2
560,688 + ABZR87_RS02630 0.19 -0.2
560,688 + ABZR87_RS02630 0.19 -1.3
560,688 + ABZR87_RS02630 0.19 -1.0
560,688 + ABZR87_RS02630 0.19 -2.0
560,688 + ABZR87_RS02630 0.19 -1.4
560,688 + ABZR87_RS02630 0.19 -1.6
560,688 + ABZR87_RS02630 0.19 -0.1
560,688 + ABZR87_RS02630 0.19 -0.6
560,688 + ABZR87_RS02630 0.19 -0.6
560,688 + ABZR87_RS02630 0.19 +2.7
560,689 - ABZR87_RS02630 0.19 -2.1
560,689 - ABZR87_RS02630 0.19 -2.7
560,689 - ABZR87_RS02630 0.19 -1.2
560,689 - ABZR87_RS02630 0.19 -2.0
560,689 - ABZR87_RS02630 0.19 +0.2
560,689 - ABZR87_RS02630 0.19 -1.0
560,689 - ABZR87_RS02630 0.19 -1.9
560,689 - ABZR87_RS02630 0.19 -1.6
560,689 - ABZR87_RS02630 0.19 -2.2
560,689 - ABZR87_RS02630 0.19 -2.0
560,689 - ABZR87_RS02630 0.19 -0.2
560,689 - ABZR87_RS02630 0.19 -2.2
560,845 + ABZR87_RS02630 0.64 +0.4
560,845 + ABZR87_RS02630 0.64 -2.0
560,971 + -1.2
560,971 + -1.4
560,971 + +0.4
560,971 + +1.4
560,971 + -1.0
560,972 - -1.3
560,972 - -0.1
560,972 - -0.9
560,972 - -0.5
560,972 - +0.4
560,972 - +0.4
560,972 - -1.1
560,972 - +0.4
560,972 - -1.9
560,972 - -0.2
561,047 + +0.0
561,373 + -0.4
561,374 - -1.1
561,495 + -3.4
561,495 + -3.6
561,495 + -4.4
561,495 + -5.0
561,495 + -6.0
561,495 + -3.8
561,495 + -4.0
561,495 + -4.0
561,495 + -2.7
561,495 + -2.7
561,496 - -0.2
561,496 - -3.4
561,496 - -3.2
561,496 - -4.3
561,496 - -3.2
561,496 - -4.0
561,496 - -1.2
561,501 + -4.8
561,501 + -4.1
561,528 + -4.6
561,528 + -4.4
561,528 + -2.4
561,528 + -2.7
561,528 + -5.1
561,529 - -4.8
561,537 + ABZR87_RS02640 0.10 -3.2

Or see this region's nucleotide sequence