Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02480

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02470 and ABZR87_RS02475 are separated by 47 nucleotidesABZR87_RS02475 and ABZR87_RS02480 are separated by 75 nucleotidesABZR87_RS02480 and ABZR87_RS02485 are separated by 8 nucleotidesABZR87_RS02485 and ABZR87_RS02490 are separated by 55 nucleotides ABZR87_RS02470: ABZR87_RS02470 - imidazole glycerol phosphate synthase subunit HisF, at 525,179 to 525,955 _RS02470 ABZR87_RS02475: ABZR87_RS02475 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 526,003 to 526,746 _RS02475 ABZR87_RS02480: ABZR87_RS02480 - imidazole glycerol phosphate synthase subunit HisH, at 526,822 to 527,475 _RS02480 ABZR87_RS02485: ABZR87_RS02485 - MarC family protein, at 527,484 to 528,107 _RS02485 ABZR87_RS02490: ABZR87_RS02490 - imidazoleglycerol-phosphate dehydratase HisB, at 528,163 to 528,753 _RS02490 Position (kb) 526 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1at 525.950 kb on + strandat 525.950 kb on + strandat 525.950 kb on + strandat 526.746 kb on + strandat 526.747 kb on - strandat 526.747 kb on - strandat 526.747 kb on - strandat 526.747 kb on - strandat 526.747 kb on - strandat 526.906 kb on - strand, within ABZR87_RS02480at 526.989 kb on - strand, within ABZR87_RS02480at 526.995 kb on + strand, within ABZR87_RS02480at 526.996 kb on - strand, within ABZR87_RS02480at 526.996 kb on - strand, within ABZR87_RS02480at 526.996 kb on - strand, within ABZR87_RS02480at 526.996 kb on - strand, within ABZR87_RS02480at 526.996 kb on - strand, within ABZR87_RS02480at 527.007 kb on - strand, within ABZR87_RS02480at 527.007 kb on - strand, within ABZR87_RS02480at 527.012 kb on + strand, within ABZR87_RS02480at 527.013 kb on - strand, within ABZR87_RS02480at 527.013 kb on - strand, within ABZR87_RS02480at 527.013 kb on - strand, within ABZR87_RS02480at 527.013 kb on - strand, within ABZR87_RS02480at 527.175 kb on - strand, within ABZR87_RS02480at 527.470 kb on - strandat 527.470 kb on - strandat 527.480 kb on + strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.485 kb on + strandat 527.486 kb on - strandat 527.486 kb on - strandat 527.486 kb on - strandat 527.486 kb on - strandat 527.486 kb on - strandat 527.497 kb on - strandat 527.905 kb on - strand, within ABZR87_RS02485at 528.165 kb on - strandat 528.165 kb on - strandat 528.165 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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525,950 + -2.1
525,950 + -1.3
525,950 + -1.7
526,746 + -1.3
526,747 - -2.9
526,747 - -2.4
526,747 - -2.4
526,747 - +0.9
526,747 - -2.5
526,906 - ABZR87_RS02480 0.13 +1.3
526,989 - ABZR87_RS02480 0.26 -1.7
526,995 + ABZR87_RS02480 0.26 -0.3
526,996 - ABZR87_RS02480 0.27 +0.3
526,996 - ABZR87_RS02480 0.27 -1.5
526,996 - ABZR87_RS02480 0.27 -2.1
526,996 - ABZR87_RS02480 0.27 -1.7
526,996 - ABZR87_RS02480 0.27 -1.8
527,007 - ABZR87_RS02480 0.28 -1.7
527,007 - ABZR87_RS02480 0.28 -0.7
527,012 + ABZR87_RS02480 0.29 -0.3
527,013 - ABZR87_RS02480 0.29 -1.8
527,013 - ABZR87_RS02480 0.29 -1.5
527,013 - ABZR87_RS02480 0.29 +0.3
527,013 - ABZR87_RS02480 0.29 -0.3
527,175 - ABZR87_RS02480 0.54 -1.7
527,470 - -1.3
527,470 - -2.7
527,480 + -1.7
527,481 - -0.6
527,481 - -2.6
527,481 - -0.1
527,481 - +0.7
527,481 - +0.2
527,481 - -3.2
527,481 - +0.2
527,481 - +1.1
527,485 + -2.7
527,486 - -0.2
527,486 - -0.4
527,486 - +0.2
527,486 - -1.6
527,486 - -0.5
527,497 - -0.1
527,905 - ABZR87_RS02485 0.67 +1.0
528,165 - +0.2
528,165 - -0.3
528,165 - -0.2

Or see this region's nucleotide sequence