Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02400

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02390 and ABZR87_RS02395 are separated by 12 nucleotidesABZR87_RS02395 and ABZR87_RS02400 are separated by 19 nucleotidesABZR87_RS02400 and ABZR87_RS02405 are separated by 420 nucleotides ABZR87_RS02390: ABZR87_RS02390 - large conductance mechanosensitive channel protein MscL, at 510,229 to 510,657 _RS02390 ABZR87_RS02395: ABZR87_RS02395 - Nif3-like dinuclear metal center hexameric protein, at 510,670 to 511,416 _RS02395 ABZR87_RS02400: ABZR87_RS02400 - Do family serine endopeptidase, at 511,436 to 512,650 _RS02400 ABZR87_RS02405: ABZR87_RS02405 - porin, at 513,071 to 514,177 _RS02405 Position (kb) 511 512 513Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 510.438 kb on + strand, within ABZR87_RS02390at 510.438 kb on + strand, within ABZR87_RS02390at 510.438 kb on + strand, within ABZR87_RS02390at 510.438 kb on + strand, within ABZR87_RS02390at 510.438 kb on + strand, within ABZR87_RS02390at 510.438 kb on + strand, within ABZR87_RS02390at 510.438 kb on + strand, within ABZR87_RS02390at 510.438 kb on + strand, within ABZR87_RS02390at 510.439 kb on - strand, within ABZR87_RS02390at 510.439 kb on - strand, within ABZR87_RS02390at 510.439 kb on - strand, within ABZR87_RS02390at 510.439 kb on - strand, within ABZR87_RS02390at 510.439 kb on - strand, within ABZR87_RS02390at 510.439 kb on - strand, within ABZR87_RS02390at 510.439 kb on - strand, within ABZR87_RS02390at 510.439 kb on - strand, within ABZR87_RS02390at 510.528 kb on + strand, within ABZR87_RS02390at 510.529 kb on - strand, within ABZR87_RS02390at 510.655 kb on + strandat 510.656 kb on - strandat 510.656 kb on - strandat 510.656 kb on - strandat 510.706 kb on + strandat 510.706 kb on + strandat 510.706 kb on + strandat 510.706 kb on + strandat 510.706 kb on + strandat 510.707 kb on - strandat 510.707 kb on - strandat 510.707 kb on - strandat 510.707 kb on - strandat 510.785 kb on + strand, within ABZR87_RS02395at 510.785 kb on + strand, within ABZR87_RS02395at 510.785 kb on + strand, within ABZR87_RS02395at 510.785 kb on + strand, within ABZR87_RS02395at 510.785 kb on + strand, within ABZR87_RS02395at 510.785 kb on + strand, within ABZR87_RS02395at 510.786 kb on - strand, within ABZR87_RS02395at 510.786 kb on - strand, within ABZR87_RS02395at 510.786 kb on - strand, within ABZR87_RS02395at 510.786 kb on - strand, within ABZR87_RS02395at 510.786 kb on - strand, within ABZR87_RS02395at 510.786 kb on - strand, within ABZR87_RS02395at 510.786 kb on - strand, within ABZR87_RS02395at 510.845 kb on + strand, within ABZR87_RS02395at 510.845 kb on + strand, within ABZR87_RS02395at 510.845 kb on + strand, within ABZR87_RS02395at 510.846 kb on - strand, within ABZR87_RS02395at 510.846 kb on - strand, within ABZR87_RS02395at 510.846 kb on - strand, within ABZR87_RS02395at 510.846 kb on - strand, within ABZR87_RS02395at 510.846 kb on - strand, within ABZR87_RS02395at 510.846 kb on - strand, within ABZR87_RS02395at 510.846 kb on - strand, within ABZR87_RS02395at 510.846 kb on - strand, within ABZR87_RS02395at 510.846 kb on - strand, within ABZR87_RS02395at 510.846 kb on - strand, within ABZR87_RS02395at 510.995 kb on - strand, within ABZR87_RS02395at 510.995 kb on - strand, within ABZR87_RS02395at 510.995 kb on - strand, within ABZR87_RS02395at 511.131 kb on - strand, within ABZR87_RS02395at 511.220 kb on + strand, within ABZR87_RS02395at 511.220 kb on + strand, within ABZR87_RS02395at 511.220 kb on + strand, within ABZR87_RS02395at 511.220 kb on + strand, within ABZR87_RS02395at 511.221 kb on - strand, within ABZR87_RS02395at 511.221 kb on - strand, within ABZR87_RS02395at 511.221 kb on - strand, within ABZR87_RS02395at 511.221 kb on - strand, within ABZR87_RS02395at 511.311 kb on + strand, within ABZR87_RS02395at 511.312 kb on - strand, within ABZR87_RS02395at 511.312 kb on - strand, within ABZR87_RS02395at 511.336 kb on + strand, within ABZR87_RS02395at 511.336 kb on + strand, within ABZR87_RS02395at 511.337 kb on - strand, within ABZR87_RS02395at 511.337 kb on - strand, within ABZR87_RS02395at 511.337 kb on - strand, within ABZR87_RS02395at 511.352 kb on + strandat 511.352 kb on + strandat 511.352 kb on + strandat 511.352 kb on + strandat 511.353 kb on - strandat 511.353 kb on - strandat 511.353 kb on - strandat 511.353 kb on - strandat 511.391 kb on + strandat 511.391 kb on + strandat 511.435 kb on + strandat 511.435 kb on + strandat 511.435 kb on + strandat 511.436 kb on - strandat 511.436 kb on - strandat 511.436 kb on - strandat 511.436 kb on - strandat 511.436 kb on - strandat 511.622 kb on + strand, within ABZR87_RS02400at 511.623 kb on - strand, within ABZR87_RS02400at 511.623 kb on - strand, within ABZR87_RS02400at 511.824 kb on + strand, within ABZR87_RS02400at 511.824 kb on + strand, within ABZR87_RS02400at 511.824 kb on + strand, within ABZR87_RS02400at 511.824 kb on + strand, within ABZR87_RS02400at 511.825 kb on - strand, within ABZR87_RS02400at 511.825 kb on - strand, within ABZR87_RS02400at 511.969 kb on + strand, within ABZR87_RS02400at 511.970 kb on - strand, within ABZR87_RS02400at 511.970 kb on - strand, within ABZR87_RS02400at 511.970 kb on - strand, within ABZR87_RS02400at 512.204 kb on + strand, within ABZR87_RS02400at 512.204 kb on + strand, within ABZR87_RS02400at 512.204 kb on + strand, within ABZR87_RS02400at 512.204 kb on + strand, within ABZR87_RS02400at 512.204 kb on + strand, within ABZR87_RS02400at 512.281 kb on + strand, within ABZR87_RS02400at 512.281 kb on + strand, within ABZR87_RS02400at 512.281 kb on + strand, within ABZR87_RS02400at 512.281 kb on + strand, within ABZR87_RS02400at 512.281 kb on + strand, within ABZR87_RS02400at 512.282 kb on - strand, within ABZR87_RS02400at 512.480 kb on - strand, within ABZR87_RS02400at 512.490 kb on + strand, within ABZR87_RS02400at 512.491 kb on - strand, within ABZR87_RS02400at 512.599 kb on + strandat 512.648 kb on + strandat 512.648 kb on + strandat 512.649 kb on - strandat 512.649 kb on - strandat 512.649 kb on - strandat 512.667 kb on + strandat 512.701 kb on + strandat 512.792 kb on + strandat 512.793 kb on - strandat 512.807 kb on + strandat 512.807 kb on + strandat 512.808 kb on - strandat 512.808 kb on - strandat 512.808 kb on - strandat 512.811 kb on + strandat 512.811 kb on + strandat 512.811 kb on + strandat 512.811 kb on + strandat 512.812 kb on - strandat 512.812 kb on - strandat 512.812 kb on - strandat 512.821 kb on + strandat 512.858 kb on + strandat 512.858 kb on + strandat 512.858 kb on + strandat 512.858 kb on + strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.859 kb on - strandat 512.870 kb on - strandat 512.870 kb on - strandat 512.905 kb on + strandat 512.905 kb on + strandat 512.905 kb on + strandat 512.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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510,438 + ABZR87_RS02390 0.49 -1.0
510,438 + ABZR87_RS02390 0.49 -0.5
510,438 + ABZR87_RS02390 0.49 +0.0
510,438 + ABZR87_RS02390 0.49 -0.0
510,438 + ABZR87_RS02390 0.49 -0.1
510,438 + ABZR87_RS02390 0.49 +0.0
510,438 + ABZR87_RS02390 0.49 +0.3
510,438 + ABZR87_RS02390 0.49 -0.7
510,439 - ABZR87_RS02390 0.49 -0.1
510,439 - ABZR87_RS02390 0.49 +0.2
510,439 - ABZR87_RS02390 0.49 +0.0
510,439 - ABZR87_RS02390 0.49 +0.1
510,439 - ABZR87_RS02390 0.49 +1.2
510,439 - ABZR87_RS02390 0.49 -0.4
510,439 - ABZR87_RS02390 0.49 -1.5
510,439 - ABZR87_RS02390 0.49 -0.1
510,528 + ABZR87_RS02390 0.70 -0.0
510,529 - ABZR87_RS02390 0.70 -0.1
510,655 + +0.0
510,656 - -2.0
510,656 - -0.3
510,656 - +0.7
510,706 + +0.6
510,706 + -0.3
510,706 + +0.0
510,706 + -0.2
510,706 + -0.6
510,707 - -0.1
510,707 - -0.3
510,707 - +0.7
510,707 - -0.1
510,785 + ABZR87_RS02395 0.15 +0.6
510,785 + ABZR87_RS02395 0.15 +0.8
510,785 + ABZR87_RS02395 0.15 -0.9
510,785 + ABZR87_RS02395 0.15 -0.4
510,785 + ABZR87_RS02395 0.15 -0.9
510,785 + ABZR87_RS02395 0.15 -0.7
510,786 - ABZR87_RS02395 0.16 -0.0
510,786 - ABZR87_RS02395 0.16 +0.5
510,786 - ABZR87_RS02395 0.16 -0.0
510,786 - ABZR87_RS02395 0.16 +0.4
510,786 - ABZR87_RS02395 0.16 +0.7
510,786 - ABZR87_RS02395 0.16 -1.3
510,786 - ABZR87_RS02395 0.16 -0.6
510,845 + ABZR87_RS02395 0.23 +0.2
510,845 + ABZR87_RS02395 0.23 +0.8
510,845 + ABZR87_RS02395 0.23 +0.2
510,846 - ABZR87_RS02395 0.24 +0.1
510,846 - ABZR87_RS02395 0.24 +0.5
510,846 - ABZR87_RS02395 0.24 +0.5
510,846 - ABZR87_RS02395 0.24 +0.7
510,846 - ABZR87_RS02395 0.24 +0.6
510,846 - ABZR87_RS02395 0.24 -0.2
510,846 - ABZR87_RS02395 0.24 -0.8
510,846 - ABZR87_RS02395 0.24 -0.5
510,846 - ABZR87_RS02395 0.24 -0.4
510,846 - ABZR87_RS02395 0.24 -0.3
510,995 - ABZR87_RS02395 0.44 -0.8
510,995 - ABZR87_RS02395 0.44 -0.3
510,995 - ABZR87_RS02395 0.44 -0.2
511,131 - ABZR87_RS02395 0.62 -0.6
511,220 + ABZR87_RS02395 0.74 +0.3
511,220 + ABZR87_RS02395 0.74 +1.1
511,220 + ABZR87_RS02395 0.74 +1.0
511,220 + ABZR87_RS02395 0.74 +1.2
511,221 - ABZR87_RS02395 0.74 -1.0
511,221 - ABZR87_RS02395 0.74 -1.2
511,221 - ABZR87_RS02395 0.74 -0.7
511,221 - ABZR87_RS02395 0.74 +1.3
511,311 + ABZR87_RS02395 0.86 +0.9
511,312 - ABZR87_RS02395 0.86 -0.3
511,312 - ABZR87_RS02395 0.86 -0.2
511,336 + ABZR87_RS02395 0.89 -0.2
511,336 + ABZR87_RS02395 0.89 +1.3
511,337 - ABZR87_RS02395 0.89 -1.9
511,337 - ABZR87_RS02395 0.89 -0.2
511,337 - ABZR87_RS02395 0.89 +0.2
511,352 + +1.3
511,352 + +0.9
511,352 + +0.4
511,352 + +0.6
511,353 - -1.2
511,353 - -0.9
511,353 - -1.4
511,353 - +0.2
511,391 + -0.4
511,391 + +1.2
511,435 + -1.7
511,435 + -1.0
511,435 + -0.4
511,436 - -1.2
511,436 - -0.9
511,436 - -1.8
511,436 - -0.8
511,436 - -1.7
511,622 + ABZR87_RS02400 0.15 -1.1
511,623 - ABZR87_RS02400 0.15 -2.8
511,623 - ABZR87_RS02400 0.15 -2.2
511,824 + ABZR87_RS02400 0.32 -0.9
511,824 + ABZR87_RS02400 0.32 -0.6
511,824 + ABZR87_RS02400 0.32 -1.5
511,824 + ABZR87_RS02400 0.32 -1.4
511,825 - ABZR87_RS02400 0.32 -1.4
511,825 - ABZR87_RS02400 0.32 -2.3
511,969 + ABZR87_RS02400 0.44 -0.9
511,970 - ABZR87_RS02400 0.44 -1.4
511,970 - ABZR87_RS02400 0.44 -0.7
511,970 - ABZR87_RS02400 0.44 -1.7
512,204 + ABZR87_RS02400 0.63 -0.5
512,204 + ABZR87_RS02400 0.63 -1.4
512,204 + ABZR87_RS02400 0.63 -1.4
512,204 + ABZR87_RS02400 0.63 -2.2
512,204 + ABZR87_RS02400 0.63 -1.0
512,281 + ABZR87_RS02400 0.70 -0.9
512,281 + ABZR87_RS02400 0.70 -0.1
512,281 + ABZR87_RS02400 0.70 -0.4
512,281 + ABZR87_RS02400 0.70 +0.5
512,281 + ABZR87_RS02400 0.70 -1.7
512,282 - ABZR87_RS02400 0.70 -1.6
512,480 - ABZR87_RS02400 0.86 -0.7
512,490 + ABZR87_RS02400 0.87 -2.2
512,491 - ABZR87_RS02400 0.87 -0.9
512,599 + +1.9
512,648 + +0.2
512,648 + -0.5
512,649 - +0.6
512,649 - -0.0
512,649 - -0.4
512,667 + -0.7
512,701 + +1.6
512,792 + +0.3
512,793 - -0.8
512,807 + +0.9
512,807 + +0.4
512,808 - +1.0
512,808 - +0.5
512,808 - +1.7
512,811 + +0.0
512,811 + -0.1
512,811 + -0.3
512,811 + +0.0
512,812 - -0.5
512,812 - +0.2
512,812 - +0.7
512,821 + -0.8
512,858 + -1.5
512,858 + +0.2
512,858 + +0.1
512,858 + +1.2
512,859 - -0.0
512,859 - +1.0
512,859 - -0.3
512,859 - -0.2
512,859 - -0.2
512,859 - +0.2
512,859 - -0.9
512,870 - +0.2
512,870 - -0.1
512,905 + +0.7
512,905 + +0.7
512,905 + +0.2
512,906 - +0.0

Or see this region's nucleotide sequence