Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02345

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02340 and ABZR87_RS02345 are separated by 31 nucleotidesABZR87_RS02345 and ABZR87_RS02350 are separated by 224 nucleotides ABZR87_RS02340: ABZR87_RS02340 - Nramp family divalent metal transporter, at 501,383 to 503,026 _RS02340 ABZR87_RS02345: ABZR87_RS02345 - hypothetical protein, at 503,058 to 503,264 _RS02345 ABZR87_RS02350: ABZR87_RS02350 - carbohydrate porin, at 503,489 to 504,883 _RS02350 Position (kb) 503 504Strain fitness (log2 ratio) -2 -1 0 1 2 3at 502.128 kb on + strand, within ABZR87_RS02340at 502.128 kb on + strand, within ABZR87_RS02340at 502.128 kb on + strand, within ABZR87_RS02340at 502.128 kb on + strand, within ABZR87_RS02340at 502.128 kb on + strand, within ABZR87_RS02340at 502.129 kb on - strand, within ABZR87_RS02340at 502.129 kb on - strand, within ABZR87_RS02340at 502.129 kb on - strand, within ABZR87_RS02340at 502.129 kb on - strand, within ABZR87_RS02340at 502.275 kb on + strand, within ABZR87_RS02340at 502.275 kb on + strand, within ABZR87_RS02340at 502.275 kb on + strand, within ABZR87_RS02340at 502.276 kb on - strand, within ABZR87_RS02340at 502.276 kb on - strand, within ABZR87_RS02340at 502.276 kb on - strand, within ABZR87_RS02340at 502.566 kb on + strand, within ABZR87_RS02340at 502.567 kb on - strand, within ABZR87_RS02340at 502.567 kb on - strand, within ABZR87_RS02340at 502.660 kb on + strand, within ABZR87_RS02340at 502.660 kb on + strand, within ABZR87_RS02340at 502.661 kb on - strand, within ABZR87_RS02340at 502.741 kb on - strand, within ABZR87_RS02340at 502.741 kb on - strand, within ABZR87_RS02340at 502.741 kb on - strand, within ABZR87_RS02340at 502.741 kb on - strand, within ABZR87_RS02340at 502.741 kb on - strand, within ABZR87_RS02340at 502.775 kb on + strand, within ABZR87_RS02340at 502.775 kb on + strand, within ABZR87_RS02340at 502.775 kb on + strand, within ABZR87_RS02340at 502.775 kb on + strand, within ABZR87_RS02340at 502.776 kb on - strand, within ABZR87_RS02340at 502.776 kb on - strand, within ABZR87_RS02340at 502.776 kb on - strand, within ABZR87_RS02340at 502.776 kb on - strand, within ABZR87_RS02340at 502.788 kb on + strand, within ABZR87_RS02340at 502.789 kb on - strand, within ABZR87_RS02340at 502.809 kb on + strand, within ABZR87_RS02340at 502.809 kb on + strand, within ABZR87_RS02340at 502.809 kb on + strand, within ABZR87_RS02340at 502.810 kb on - strand, within ABZR87_RS02340at 502.810 kb on - strand, within ABZR87_RS02340at 502.810 kb on - strand, within ABZR87_RS02340at 502.810 kb on - strand, within ABZR87_RS02340at 502.810 kb on - strand, within ABZR87_RS02340at 502.813 kb on + strand, within ABZR87_RS02340at 502.813 kb on + strand, within ABZR87_RS02340at 502.814 kb on - strand, within ABZR87_RS02340at 503.016 kb on - strandat 503.059 kb on + strandat 503.059 kb on + strandat 503.059 kb on + strandat 503.059 kb on + strandat 503.060 kb on - strandat 503.065 kb on + strandat 503.065 kb on + strandat 503.065 kb on + strandat 503.065 kb on + strandat 503.065 kb on + strandat 503.066 kb on - strandat 503.066 kb on - strandat 503.098 kb on + strand, within ABZR87_RS02345at 503.099 kb on - strand, within ABZR87_RS02345at 503.429 kb on + strandat 503.451 kb on - strandat 503.472 kb on + strandat 503.472 kb on + strandat 503.472 kb on + strandat 503.473 kb on - strandat 503.473 kb on - strandat 503.473 kb on - strandat 503.473 kb on - strandat 503.484 kb on + strandat 503.484 kb on + strandat 503.485 kb on - strandat 503.491 kb on - strandat 503.491 kb on - strandat 503.491 kb on - strandat 503.511 kb on - strandat 503.547 kb on + strandat 503.547 kb on + strandat 503.563 kb on + strandat 503.564 kb on - strandat 503.613 kb on + strandat 503.613 kb on + strandat 503.614 kb on - strandat 503.614 kb on - strandat 503.614 kb on - strandat 503.614 kb on - strandat 503.643 kb on + strand, within ABZR87_RS02350at 503.643 kb on + strand, within ABZR87_RS02350at 503.643 kb on + strand, within ABZR87_RS02350at 503.643 kb on + strand, within ABZR87_RS02350at 503.643 kb on + strand, within ABZR87_RS02350at 503.694 kb on + strand, within ABZR87_RS02350at 503.695 kb on - strand, within ABZR87_RS02350at 503.695 kb on - strand, within ABZR87_RS02350at 503.823 kb on + strand, within ABZR87_RS02350at 503.823 kb on + strand, within ABZR87_RS02350at 503.823 kb on + strand, within ABZR87_RS02350at 503.823 kb on + strand, within ABZR87_RS02350at 503.824 kb on - strand, within ABZR87_RS02350at 504.060 kb on + strand, within ABZR87_RS02350at 504.061 kb on - strand, within ABZR87_RS02350at 504.061 kb on - strand, within ABZR87_RS02350at 504.091 kb on - strand, within ABZR87_RS02350at 504.189 kb on + strand, within ABZR87_RS02350at 504.190 kb on - strand, within ABZR87_RS02350at 504.213 kb on + strand, within ABZR87_RS02350at 504.213 kb on + strand, within ABZR87_RS02350at 504.213 kb on + strand, within ABZR87_RS02350at 504.213 kb on + strand, within ABZR87_RS02350at 504.214 kb on - strand, within ABZR87_RS02350at 504.214 kb on - strand, within ABZR87_RS02350at 504.214 kb on - strand, within ABZR87_RS02350at 504.214 kb on - strand, within ABZR87_RS02350at 504.234 kb on + strand, within ABZR87_RS02350

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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502,128 + ABZR87_RS02340 0.45 +0.5
502,128 + ABZR87_RS02340 0.45 +0.5
502,128 + ABZR87_RS02340 0.45 +1.1
502,128 + ABZR87_RS02340 0.45 +0.3
502,128 + ABZR87_RS02340 0.45 -0.3
502,129 - ABZR87_RS02340 0.45 +0.5
502,129 - ABZR87_RS02340 0.45 +0.8
502,129 - ABZR87_RS02340 0.45 -0.3
502,129 - ABZR87_RS02340 0.45 -0.1
502,275 + ABZR87_RS02340 0.54 -0.1
502,275 + ABZR87_RS02340 0.54 +0.5
502,275 + ABZR87_RS02340 0.54 +0.8
502,276 - ABZR87_RS02340 0.54 +0.2
502,276 - ABZR87_RS02340 0.54 +0.5
502,276 - ABZR87_RS02340 0.54 -0.3
502,566 + ABZR87_RS02340 0.72 -0.0
502,567 - ABZR87_RS02340 0.72 +1.1
502,567 - ABZR87_RS02340 0.72 +0.4
502,660 + ABZR87_RS02340 0.78 +2.3
502,660 + ABZR87_RS02340 0.78 +0.3
502,661 - ABZR87_RS02340 0.78 +1.1
502,741 - ABZR87_RS02340 0.83 +0.8
502,741 - ABZR87_RS02340 0.83 +0.4
502,741 - ABZR87_RS02340 0.83 +0.9
502,741 - ABZR87_RS02340 0.83 +1.1
502,741 - ABZR87_RS02340 0.83 +0.8
502,775 + ABZR87_RS02340 0.85 +1.0
502,775 + ABZR87_RS02340 0.85 -0.2
502,775 + ABZR87_RS02340 0.85 -0.9
502,775 + ABZR87_RS02340 0.85 -0.2
502,776 - ABZR87_RS02340 0.85 +0.0
502,776 - ABZR87_RS02340 0.85 +2.5
502,776 - ABZR87_RS02340 0.85 -0.1
502,776 - ABZR87_RS02340 0.85 -0.7
502,788 + ABZR87_RS02340 0.85 +0.2
502,789 - ABZR87_RS02340 0.86 -0.8
502,809 + ABZR87_RS02340 0.87 -0.0
502,809 + ABZR87_RS02340 0.87 -0.7
502,809 + ABZR87_RS02340 0.87 +1.2
502,810 - ABZR87_RS02340 0.87 -1.1
502,810 - ABZR87_RS02340 0.87 +2.9
502,810 - ABZR87_RS02340 0.87 +1.1
502,810 - ABZR87_RS02340 0.87 +0.2
502,810 - ABZR87_RS02340 0.87 +0.6
502,813 + ABZR87_RS02340 0.87 +0.2
502,813 + ABZR87_RS02340 0.87 +0.9
502,814 - ABZR87_RS02340 0.87 +0.1
503,016 - +0.1
503,059 + -0.4
503,059 + +0.6
503,059 + -0.3
503,059 + -0.1
503,060 - -0.3
503,065 + -1.1
503,065 + +0.3
503,065 + +0.5
503,065 + +0.5
503,065 + +0.5
503,066 - +0.1
503,066 - +0.7
503,098 + ABZR87_RS02345 0.19 -0.3
503,099 - ABZR87_RS02345 0.20 -1.3
503,429 + -0.0
503,451 - -0.8
503,472 + -1.0
503,472 + -0.2
503,472 + +0.6
503,473 - +0.0
503,473 - -0.3
503,473 - -0.5
503,473 - -1.8
503,484 + -0.9
503,484 + +0.8
503,485 - -0.9
503,491 - -0.4
503,491 - -0.2
503,491 - -0.2
503,511 - -0.1
503,547 + +0.3
503,547 + -0.9
503,563 + +0.1
503,564 - +0.2
503,613 + -1.7
503,613 + +1.0
503,614 - +0.1
503,614 - +1.1
503,614 - +0.7
503,614 - +0.8
503,643 + ABZR87_RS02350 0.11 +0.1
503,643 + ABZR87_RS02350 0.11 +0.9
503,643 + ABZR87_RS02350 0.11 -0.2
503,643 + ABZR87_RS02350 0.11 +0.3
503,643 + ABZR87_RS02350 0.11 +0.3
503,694 + ABZR87_RS02350 0.15 +1.0
503,695 - ABZR87_RS02350 0.15 +0.8
503,695 - ABZR87_RS02350 0.15 -0.1
503,823 + ABZR87_RS02350 0.24 +1.3
503,823 + ABZR87_RS02350 0.24 +1.7
503,823 + ABZR87_RS02350 0.24 +0.6
503,823 + ABZR87_RS02350 0.24 +2.4
503,824 - ABZR87_RS02350 0.24 +0.0
504,060 + ABZR87_RS02350 0.41 -0.1
504,061 - ABZR87_RS02350 0.41 +0.5
504,061 - ABZR87_RS02350 0.41 -0.7
504,091 - ABZR87_RS02350 0.43 +0.5
504,189 + ABZR87_RS02350 0.50 -1.0
504,190 - ABZR87_RS02350 0.50 -0.4
504,213 + ABZR87_RS02350 0.52 +0.2
504,213 + ABZR87_RS02350 0.52 -0.1
504,213 + ABZR87_RS02350 0.52 +0.3
504,213 + ABZR87_RS02350 0.52 +0.4
504,214 - ABZR87_RS02350 0.52 +0.6
504,214 - ABZR87_RS02350 0.52 -0.6
504,214 - ABZR87_RS02350 0.52 +1.0
504,214 - ABZR87_RS02350 0.52 -0.3
504,234 + ABZR87_RS02350 0.53 +1.1

Or see this region's nucleotide sequence