Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02330

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02320 and ABZR87_RS02325 are separated by 0 nucleotidesABZR87_RS02325 and ABZR87_RS02330 are separated by 3 nucleotidesABZR87_RS02330 and ABZR87_RS02335 are separated by 9 nucleotides ABZR87_RS02320: ABZR87_RS02320 - cytochrome o ubiquinol oxidase subunit IV, at 496,791 to 497,159 _RS02320 ABZR87_RS02325: ABZR87_RS02325 - cytochrome o ubiquinol oxidase subunit III, at 497,160 to 497,801 _RS02325 ABZR87_RS02330: ABZR87_RS02330 - cytochrome o ubiquinol oxidase subunit I, at 497,805 to 499,784 _RS02330 ABZR87_RS02335: ABZR87_RS02335 - ubiquinol oxidase subunit II, at 499,794 to 500,747 _RS02335 Position (kb) 497 498 499 500Strain fitness (log2 ratio) -2 -1 0 1 2 3at 496.820 kb on + strandat 496.821 kb on - strandat 496.821 kb on - strandat 496.930 kb on + strand, within ABZR87_RS02320at 496.930 kb on + strand, within ABZR87_RS02320at 496.930 kb on + strand, within ABZR87_RS02320at 496.931 kb on - strand, within ABZR87_RS02320at 496.931 kb on - strand, within ABZR87_RS02320at 497.161 kb on + strandat 497.162 kb on - strandat 497.179 kb on + strandat 497.179 kb on + strandat 497.179 kb on + strandat 497.180 kb on - strandat 497.180 kb on - strandat 497.180 kb on - strandat 497.367 kb on + strand, within ABZR87_RS02325at 497.527 kb on + strand, within ABZR87_RS02325at 497.527 kb on + strand, within ABZR87_RS02325at 497.528 kb on - strand, within ABZR87_RS02325at 497.528 kb on - strand, within ABZR87_RS02325at 497.572 kb on + strand, within ABZR87_RS02325at 497.572 kb on + strand, within ABZR87_RS02325at 497.573 kb on - strand, within ABZR87_RS02325at 497.660 kb on + strand, within ABZR87_RS02325at 497.661 kb on - strand, within ABZR87_RS02325at 497.680 kb on + strand, within ABZR87_RS02325at 497.681 kb on - strand, within ABZR87_RS02325at 497.784 kb on + strandat 497.785 kb on - strandat 497.785 kb on - strandat 497.806 kb on + strandat 497.806 kb on + strandat 497.834 kb on - strandat 497.872 kb on + strandat 497.873 kb on - strandat 497.873 kb on - strandat 497.873 kb on - strandat 497.873 kb on - strandat 497.876 kb on - strandat 497.876 kb on - strandat 498.031 kb on + strand, within ABZR87_RS02330at 498.043 kb on + strand, within ABZR87_RS02330at 498.136 kb on + strand, within ABZR87_RS02330at 498.137 kb on - strand, within ABZR87_RS02330at 498.137 kb on - strand, within ABZR87_RS02330at 498.173 kb on + strand, within ABZR87_RS02330at 498.173 kb on + strand, within ABZR87_RS02330at 498.173 kb on + strand, within ABZR87_RS02330at 498.329 kb on + strand, within ABZR87_RS02330at 498.370 kb on + strand, within ABZR87_RS02330at 498.370 kb on + strand, within ABZR87_RS02330at 498.370 kb on + strand, within ABZR87_RS02330at 498.371 kb on - strand, within ABZR87_RS02330at 498.371 kb on - strand, within ABZR87_RS02330at 498.391 kb on + strand, within ABZR87_RS02330at 498.391 kb on + strand, within ABZR87_RS02330at 498.392 kb on - strand, within ABZR87_RS02330at 498.473 kb on - strand, within ABZR87_RS02330at 498.479 kb on + strand, within ABZR87_RS02330at 498.479 kb on + strand, within ABZR87_RS02330at 498.480 kb on - strand, within ABZR87_RS02330at 498.480 kb on - strand, within ABZR87_RS02330at 498.480 kb on - strand, within ABZR87_RS02330at 498.491 kb on - strand, within ABZR87_RS02330at 498.673 kb on + strand, within ABZR87_RS02330at 498.673 kb on + strand, within ABZR87_RS02330at 498.673 kb on + strand, within ABZR87_RS02330at 498.674 kb on - strand, within ABZR87_RS02330at 498.922 kb on + strand, within ABZR87_RS02330at 498.922 kb on + strand, within ABZR87_RS02330at 498.922 kb on + strand, within ABZR87_RS02330at 498.922 kb on + strand, within ABZR87_RS02330at 498.923 kb on - strand, within ABZR87_RS02330at 498.923 kb on - strand, within ABZR87_RS02330at 498.923 kb on - strand, within ABZR87_RS02330at 498.923 kb on - strand, within ABZR87_RS02330at 498.961 kb on + strand, within ABZR87_RS02330at 498.962 kb on - strand, within ABZR87_RS02330at 498.962 kb on - strand, within ABZR87_RS02330at 498.962 kb on - strand, within ABZR87_RS02330at 498.975 kb on - strand, within ABZR87_RS02330at 499.216 kb on + strand, within ABZR87_RS02330at 499.216 kb on + strand, within ABZR87_RS02330at 499.216 kb on + strand, within ABZR87_RS02330at 499.216 kb on + strand, within ABZR87_RS02330at 499.217 kb on - strand, within ABZR87_RS02330at 499.217 kb on - strand, within ABZR87_RS02330at 499.220 kb on - strand, within ABZR87_RS02330at 499.220 kb on - strand, within ABZR87_RS02330at 499.220 kb on - strand, within ABZR87_RS02330at 499.243 kb on + strand, within ABZR87_RS02330at 499.243 kb on + strand, within ABZR87_RS02330at 499.490 kb on - strand, within ABZR87_RS02330at 499.603 kb on + strandat 499.603 kb on + strandat 499.603 kb on + strandat 499.603 kb on + strandat 499.603 kb on + strandat 499.604 kb on - strandat 499.604 kb on - strandat 499.658 kb on - strandat 499.675 kb on + strandat 499.675 kb on + strandat 499.676 kb on - strandat 499.676 kb on - strandat 499.676 kb on - strandat 499.796 kb on - strandat 499.939 kb on + strand, within ABZR87_RS02335at 499.939 kb on + strand, within ABZR87_RS02335at 499.939 kb on + strand, within ABZR87_RS02335at 499.939 kb on + strand, within ABZR87_RS02335at 499.939 kb on + strand, within ABZR87_RS02335at 499.940 kb on - strand, within ABZR87_RS02335at 499.940 kb on - strand, within ABZR87_RS02335at 499.940 kb on - strand, within ABZR87_RS02335at 499.940 kb on - strand, within ABZR87_RS02335at 499.984 kb on + strand, within ABZR87_RS02335at 499.984 kb on + strand, within ABZR87_RS02335at 499.985 kb on - strand, within ABZR87_RS02335at 500.146 kb on + strand, within ABZR87_RS02335at 500.224 kb on + strand, within ABZR87_RS02335at 500.224 kb on + strand, within ABZR87_RS02335at 500.224 kb on + strand, within ABZR87_RS02335at 500.224 kb on + strand, within ABZR87_RS02335at 500.224 kb on + strand, within ABZR87_RS02335at 500.350 kb on + strand, within ABZR87_RS02335at 500.425 kb on + strand, within ABZR87_RS02335at 500.426 kb on - strand, within ABZR87_RS02335at 500.450 kb on + strand, within ABZR87_RS02335at 500.450 kb on + strand, within ABZR87_RS02335at 500.450 kb on + strand, within ABZR87_RS02335at 500.451 kb on - strand, within ABZR87_RS02335at 500.452 kb on + strand, within ABZR87_RS02335at 500.452 kb on + strand, within ABZR87_RS02335at 500.452 kb on + strand, within ABZR87_RS02335at 500.452 kb on + strand, within ABZR87_RS02335at 500.452 kb on + strand, within ABZR87_RS02335at 500.452 kb on + strand, within ABZR87_RS02335at 500.453 kb on - strand, within ABZR87_RS02335at 500.453 kb on - strand, within ABZR87_RS02335at 500.453 kb on - strand, within ABZR87_RS02335at 500.453 kb on - strand, within ABZR87_RS02335at 500.453 kb on - strand, within ABZR87_RS02335at 500.453 kb on - strand, within ABZR87_RS02335at 500.543 kb on - strand, within ABZR87_RS02335at 500.569 kb on + strand, within ABZR87_RS02335at 500.569 kb on + strand, within ABZR87_RS02335at 500.747 kb on + strandat 500.747 kb on + strandat 500.747 kb on + strandat 500.747 kb on + strandat 500.747 kb on + strandat 500.747 kb on + strandat 500.747 kb on + strandat 500.747 kb on + strandat 500.747 kb on + strandat 500.747 kb on + strandat 500.748 kb on - strandat 500.748 kb on - strandat 500.748 kb on - strandat 500.748 kb on - strandat 500.748 kb on - strandat 500.748 kb on - strandat 500.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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496,820 + +0.9
496,821 - +0.9
496,821 - +1.5
496,930 + ABZR87_RS02320 0.38 +0.2
496,930 + ABZR87_RS02320 0.38 +1.5
496,930 + ABZR87_RS02320 0.38 +1.7
496,931 - ABZR87_RS02320 0.38 -0.3
496,931 - ABZR87_RS02320 0.38 +0.9
497,161 + +0.8
497,162 - +1.0
497,179 + +0.1
497,179 + +0.1
497,179 + +0.8
497,180 - +0.8
497,180 - +0.6
497,180 - +0.3
497,367 + ABZR87_RS02325 0.32 +0.6
497,527 + ABZR87_RS02325 0.57 +1.7
497,527 + ABZR87_RS02325 0.57 +0.7
497,528 - ABZR87_RS02325 0.57 -0.3
497,528 - ABZR87_RS02325 0.57 +0.2
497,572 + ABZR87_RS02325 0.64 -0.1
497,572 + ABZR87_RS02325 0.64 +0.0
497,573 - ABZR87_RS02325 0.64 +0.1
497,660 + ABZR87_RS02325 0.78 -1.1
497,661 - ABZR87_RS02325 0.78 +0.4
497,680 + ABZR87_RS02325 0.81 +2.0
497,681 - ABZR87_RS02325 0.81 +1.7
497,784 + -0.4
497,785 - +0.9
497,785 - +0.8
497,806 + +0.7
497,806 + +1.7
497,834 - +0.1
497,872 + +1.9
497,873 - +0.3
497,873 - +0.0
497,873 - -0.0
497,873 - +0.8
497,876 - +0.9
497,876 - +1.3
498,031 + ABZR87_RS02330 0.11 +1.7
498,043 + ABZR87_RS02330 0.12 +1.1
498,136 + ABZR87_RS02330 0.17 +1.2
498,137 - ABZR87_RS02330 0.17 +0.1
498,137 - ABZR87_RS02330 0.17 +3.1
498,173 + ABZR87_RS02330 0.19 -0.6
498,173 + ABZR87_RS02330 0.19 +0.1
498,173 + ABZR87_RS02330 0.19 +1.3
498,329 + ABZR87_RS02330 0.26 +1.3
498,370 + ABZR87_RS02330 0.29 -2.0
498,370 + ABZR87_RS02330 0.29 +0.2
498,370 + ABZR87_RS02330 0.29 +0.1
498,371 - ABZR87_RS02330 0.29 -0.0
498,371 - ABZR87_RS02330 0.29 +1.3
498,391 + ABZR87_RS02330 0.30 +0.6
498,391 + ABZR87_RS02330 0.30 +0.7
498,392 - ABZR87_RS02330 0.30 +0.4
498,473 - ABZR87_RS02330 0.34 +0.7
498,479 + ABZR87_RS02330 0.34 +0.5
498,479 + ABZR87_RS02330 0.34 +2.1
498,480 - ABZR87_RS02330 0.34 +2.5
498,480 - ABZR87_RS02330 0.34 +1.0
498,480 - ABZR87_RS02330 0.34 +1.0
498,491 - ABZR87_RS02330 0.35 +0.0
498,673 + ABZR87_RS02330 0.44 +0.3
498,673 + ABZR87_RS02330 0.44 -0.2
498,673 + ABZR87_RS02330 0.44 +1.2
498,674 - ABZR87_RS02330 0.44 +0.9
498,922 + ABZR87_RS02330 0.56 -0.7
498,922 + ABZR87_RS02330 0.56 +1.1
498,922 + ABZR87_RS02330 0.56 +0.3
498,922 + ABZR87_RS02330 0.56 +0.9
498,923 - ABZR87_RS02330 0.56 +0.3
498,923 - ABZR87_RS02330 0.56 -0.2
498,923 - ABZR87_RS02330 0.56 +1.1
498,923 - ABZR87_RS02330 0.56 +2.1
498,961 + ABZR87_RS02330 0.58 +0.2
498,962 - ABZR87_RS02330 0.58 +1.1
498,962 - ABZR87_RS02330 0.58 +1.2
498,962 - ABZR87_RS02330 0.58 +2.0
498,975 - ABZR87_RS02330 0.59 +0.9
499,216 + ABZR87_RS02330 0.71 +2.4
499,216 + ABZR87_RS02330 0.71 +0.0
499,216 + ABZR87_RS02330 0.71 +0.7
499,216 + ABZR87_RS02330 0.71 +0.3
499,217 - ABZR87_RS02330 0.71 +0.1
499,217 - ABZR87_RS02330 0.71 +0.5
499,220 - ABZR87_RS02330 0.71 +0.6
499,220 - ABZR87_RS02330 0.71 +0.2
499,220 - ABZR87_RS02330 0.71 +0.1
499,243 + ABZR87_RS02330 0.73 -1.3
499,243 + ABZR87_RS02330 0.73 +0.3
499,490 - ABZR87_RS02330 0.85 +0.5
499,603 + +0.9
499,603 + +0.5
499,603 + +1.1
499,603 + +0.7
499,603 + +0.0
499,604 - +0.2
499,604 - +0.5
499,658 - +0.5
499,675 + +0.1
499,675 + -1.3
499,676 - +1.3
499,676 - +0.8
499,676 - +0.9
499,796 - +1.9
499,939 + ABZR87_RS02335 0.15 +0.6
499,939 + ABZR87_RS02335 0.15 -0.5
499,939 + ABZR87_RS02335 0.15 +0.2
499,939 + ABZR87_RS02335 0.15 -0.3
499,939 + ABZR87_RS02335 0.15 +2.2
499,940 - ABZR87_RS02335 0.15 +1.2
499,940 - ABZR87_RS02335 0.15 +0.9
499,940 - ABZR87_RS02335 0.15 -0.1
499,940 - ABZR87_RS02335 0.15 +0.6
499,984 + ABZR87_RS02335 0.20 +0.3
499,984 + ABZR87_RS02335 0.20 -0.0
499,985 - ABZR87_RS02335 0.20 -0.3
500,146 + ABZR87_RS02335 0.37 -1.0
500,224 + ABZR87_RS02335 0.45 +2.7
500,224 + ABZR87_RS02335 0.45 +1.1
500,224 + ABZR87_RS02335 0.45 +0.7
500,224 + ABZR87_RS02335 0.45 +0.9
500,224 + ABZR87_RS02335 0.45 -0.5
500,350 + ABZR87_RS02335 0.58 +0.9
500,425 + ABZR87_RS02335 0.66 +1.2
500,426 - ABZR87_RS02335 0.66 +0.3
500,450 + ABZR87_RS02335 0.69 +1.1
500,450 + ABZR87_RS02335 0.69 +1.2
500,450 + ABZR87_RS02335 0.69 +0.6
500,451 - ABZR87_RS02335 0.69 +1.1
500,452 + ABZR87_RS02335 0.69 +1.1
500,452 + ABZR87_RS02335 0.69 -0.7
500,452 + ABZR87_RS02335 0.69 +0.0
500,452 + ABZR87_RS02335 0.69 +1.0
500,452 + ABZR87_RS02335 0.69 +0.4
500,452 + ABZR87_RS02335 0.69 -0.7
500,453 - ABZR87_RS02335 0.69 +0.3
500,453 - ABZR87_RS02335 0.69 +0.0
500,453 - ABZR87_RS02335 0.69 -0.8
500,453 - ABZR87_RS02335 0.69 +0.1
500,453 - ABZR87_RS02335 0.69 +0.3
500,453 - ABZR87_RS02335 0.69 +1.1
500,543 - ABZR87_RS02335 0.79 +1.3
500,569 + ABZR87_RS02335 0.81 +1.7
500,569 + ABZR87_RS02335 0.81 +0.7
500,747 + +0.3
500,747 + +1.3
500,747 + -0.1
500,747 + -0.8
500,747 + +0.6
500,747 + -0.1
500,747 + +1.0
500,747 + -0.3
500,747 + +0.2
500,747 + +1.6
500,748 - +0.2
500,748 - +0.9
500,748 - +0.1
500,748 - +0.5
500,748 - -1.2
500,748 - +0.2
500,748 - +1.3

Or see this region's nucleotide sequence