Experiment: Citric Acid 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004579 and ABIE53_004580 are separated by 4 nucleotides ABIE53_004580 and ABIE53_004581 are separated by 40 nucleotides ABIE53_004581 and ABIE53_004582 are separated by 143 nucleotides
ABIE53_004579: ABIE53_004579 - RNA polymerase sigma factor (sigma-70 family), at 765,031 to 766,305
_004579
ABIE53_004580: ABIE53_004580 - putative lactoylglutathione lyase, at 766,310 to 766,717
_004580
ABIE53_004581: ABIE53_004581 - hypothetical protein, at 766,758 to 767,171
_004581
ABIE53_004582: ABIE53_004582 - hypothetical protein, at 767,315 to 767,668
_004582
Position (kb) 766
767 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 765.317 kb on + strand, within ABIE53_004579 at 765.317 kb on + strand, within ABIE53_004579 at 765.317 kb on + strand, within ABIE53_004579 at 765.317 kb on + strand, within ABIE53_004579 at 765.318 kb on - strand, within ABIE53_004579 at 765.318 kb on - strand, within ABIE53_004579 at 765.318 kb on - strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.319 kb on + strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.320 kb on - strand, within ABIE53_004579 at 765.401 kb on + strand, within ABIE53_004579 at 765.401 kb on + strand, within ABIE53_004579 at 765.401 kb on + strand, within ABIE53_004579 at 765.683 kb on + strand, within ABIE53_004579 at 765.704 kb on + strand, within ABIE53_004579 at 765.704 kb on + strand, within ABIE53_004579 at 765.704 kb on + strand, within ABIE53_004579 at 765.704 kb on + strand, within ABIE53_004579 at 765.704 kb on + strand, within ABIE53_004579 at 765.705 kb on - strand, within ABIE53_004579 at 765.705 kb on - strand, within ABIE53_004579 at 765.705 kb on - strand, within ABIE53_004579 at 766.341 kb on + strand at 766.341 kb on + strand at 766.341 kb on + strand at 766.341 kb on + strand at 766.341 kb on + strand at 766.341 kb on + strand at 766.341 kb on + strand at 766.342 kb on - strand at 766.342 kb on - strand at 766.342 kb on - strand at 766.342 kb on - strand at 766.342 kb on - strand at 766.342 kb on - strand at 766.342 kb on - strand at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.357 kb on + strand, within ABIE53_004580 at 766.358 kb on - strand, within ABIE53_004580 at 766.358 kb on - strand, within ABIE53_004580 at 766.358 kb on - strand, within ABIE53_004580 at 766.358 kb on - strand, within ABIE53_004580 at 766.358 kb on - strand, within ABIE53_004580 at 766.358 kb on - strand, within ABIE53_004580 at 766.358 kb on - strand, within ABIE53_004580 at 766.358 kb on - strand, within ABIE53_004580 at 766.388 kb on + strand, within ABIE53_004580 at 766.389 kb on + strand, within ABIE53_004580 at 766.389 kb on + strand, within ABIE53_004580 at 766.389 kb on + strand, within ABIE53_004580 at 766.390 kb on - strand, within ABIE53_004580 at 766.390 kb on - strand, within ABIE53_004580 at 766.390 kb on - strand, within ABIE53_004580 at 766.390 kb on - strand, within ABIE53_004580 at 766.390 kb on - strand, within ABIE53_004580 at 766.390 kb on - strand, within ABIE53_004580 at 766.401 kb on + strand, within ABIE53_004580 at 766.401 kb on + strand, within ABIE53_004580 at 766.534 kb on + strand, within ABIE53_004580 at 766.534 kb on + strand, within ABIE53_004580 at 766.535 kb on - strand, within ABIE53_004580 at 766.759 kb on + strand at 766.760 kb on - strand at 766.936 kb on + strand, within ABIE53_004581 at 766.936 kb on + strand, within ABIE53_004581 at 767.003 kb on - strand, within ABIE53_004581 at 767.003 kb on - strand, within ABIE53_004581 at 767.003 kb on - strand, within ABIE53_004581 at 767.003 kb on - strand, within ABIE53_004581 at 767.083 kb on + strand, within ABIE53_004581 at 767.179 kb on - strand at 767.200 kb on + strand at 767.200 kb on + strand at 767.200 kb on + strand at 767.200 kb on + strand at 767.200 kb on + strand at 767.200 kb on + strand at 767.200 kb on + strand at 767.200 kb on + strand at 767.200 kb on + strand at 767.201 kb on - strand at 767.201 kb on - strand at 767.201 kb on - strand at 767.201 kb on - strand at 767.201 kb on - strand at 767.201 kb on - strand at 767.201 kb on - strand at 767.229 kb on + strand at 767.229 kb on + strand at 767.230 kb on - strand at 767.230 kb on - strand at 767.230 kb on - strand at 767.230 kb on - strand at 767.230 kb on - strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.267 kb on + strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.316 kb on + strand at 767.316 kb on + strand at 767.316 kb on + strand at 767.316 kb on + strand at 767.316 kb on + strand at 767.316 kb on + strand at 767.316 kb on + strand at 767.316 kb on + strand at 767.317 kb on - strand at 767.317 kb on - strand at 767.317 kb on - strand at 767.317 kb on - strand at 767.317 kb on - strand at 767.317 kb on - strand at 767.342 kb on + strand at 767.343 kb on - strand at 767.343 kb on - strand at 767.343 kb on - strand at 767.424 kb on + strand, within ABIE53_004582 at 767.424 kb on + strand, within ABIE53_004582 at 767.424 kb on + strand, within ABIE53_004582 at 767.424 kb on + strand, within ABIE53_004582 at 767.424 kb on + strand, within ABIE53_004582 at 767.425 kb on - strand, within ABIE53_004582 at 767.425 kb on - strand, within ABIE53_004582 at 767.425 kb on - strand, within ABIE53_004582 at 767.425 kb on - strand, within ABIE53_004582 at 767.425 kb on - strand, within ABIE53_004582 at 767.593 kb on - strand, within ABIE53_004582 at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.659 kb on + strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.660 kb on - strand at 767.661 kb on + strand at 767.661 kb on + strand at 767.661 kb on + strand at 767.661 kb on + strand at 767.661 kb on + strand at 767.661 kb on + strand at 767.661 kb on + strand at 767.661 kb on + strand at 767.661 kb on + strand at 767.661 kb on + strand at 767.661 kb on + strand at 767.661 kb on + strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.662 kb on - strand at 767.714 kb on + strand at 767.714 kb on + strand at 767.714 kb on + strand at 767.714 kb on + strand at 767.714 kb on + strand at 767.715 kb on - strand at 767.715 kb on - strand at 767.715 kb on - strand at 767.715 kb on - strand at 767.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid 20 mM (C) remove 765,317 + ABIE53_004579 0.22 +3.2 765,317 + ABIE53_004579 0.22 +0.8 765,317 + ABIE53_004579 0.22 -2.2 765,317 + ABIE53_004579 0.22 -0.9 765,318 - ABIE53_004579 0.23 -2.2 765,318 - ABIE53_004579 0.23 -0.4 765,318 - ABIE53_004579 0.23 -0.4 765,319 + ABIE53_004579 0.23 +1.7 765,319 + ABIE53_004579 0.23 +0.6 765,319 + ABIE53_004579 0.23 -0.2 765,319 + ABIE53_004579 0.23 -1.0 765,319 + ABIE53_004579 0.23 +1.2 765,319 + ABIE53_004579 0.23 -2.0 765,320 - ABIE53_004579 0.23 -0.5 765,320 - ABIE53_004579 0.23 +1.8 765,320 - ABIE53_004579 0.23 -0.7 765,320 - ABIE53_004579 0.23 +0.6 765,320 - ABIE53_004579 0.23 +0.4 765,320 - ABIE53_004579 0.23 +0.6 765,320 - ABIE53_004579 0.23 +0.8 765,320 - ABIE53_004579 0.23 -1.7 765,320 - ABIE53_004579 0.23 +2.2 765,320 - ABIE53_004579 0.23 +0.2 765,401 + ABIE53_004579 0.29 +1.6 765,401 + ABIE53_004579 0.29 +1.0 765,401 + ABIE53_004579 0.29 +2.9 765,683 + ABIE53_004579 0.51 -0.6 765,704 + ABIE53_004579 0.53 +0.2 765,704 + ABIE53_004579 0.53 -0.3 765,704 + ABIE53_004579 0.53 -0.4 765,704 + ABIE53_004579 0.53 -0.4 765,704 + ABIE53_004579 0.53 +2.3 765,705 - ABIE53_004579 0.53 -1.7 765,705 - ABIE53_004579 0.53 +0.8 765,705 - ABIE53_004579 0.53 +1.7 766,341 + -1.7 766,341 + -2.0 766,341 + +0.0 766,341 + -0.3 766,341 + +2.2 766,341 + -1.4 766,341 + -0.4 766,342 - -0.8 766,342 - -1.1 766,342 - -2.0 766,342 - -2.3 766,342 - +0.3 766,342 - +0.8 766,342 - -0.7 766,357 + ABIE53_004580 0.12 -0.3 766,357 + ABIE53_004580 0.12 -0.0 766,357 + ABIE53_004580 0.12 +0.6 766,357 + ABIE53_004580 0.12 +2.2 766,357 + ABIE53_004580 0.12 -0.4 766,357 + ABIE53_004580 0.12 +1.1 766,357 + ABIE53_004580 0.12 -0.0 766,357 + ABIE53_004580 0.12 +0.6 766,357 + ABIE53_004580 0.12 -0.4 766,357 + ABIE53_004580 0.12 -0.9 766,357 + ABIE53_004580 0.12 +0.4 766,357 + ABIE53_004580 0.12 +0.2 766,357 + ABIE53_004580 0.12 -1.0 766,357 + ABIE53_004580 0.12 +0.6 766,357 + ABIE53_004580 0.12 -2.0 766,357 + ABIE53_004580 0.12 +0.4 766,357 + ABIE53_004580 0.12 +1.6 766,357 + ABIE53_004580 0.12 -2.2 766,357 + ABIE53_004580 0.12 -0.6 766,358 - ABIE53_004580 0.12 +0.7 766,358 - ABIE53_004580 0.12 +0.0 766,358 - ABIE53_004580 0.12 -0.0 766,358 - ABIE53_004580 0.12 +0.6 766,358 - ABIE53_004580 0.12 +0.5 766,358 - ABIE53_004580 0.12 +1.3 766,358 - ABIE53_004580 0.12 -0.2 766,358 - ABIE53_004580 0.12 -0.2 766,388 + ABIE53_004580 0.19 +1.2 766,389 + ABIE53_004580 0.19 -0.1 766,389 + ABIE53_004580 0.19 -0.4 766,389 + ABIE53_004580 0.19 -1.6 766,390 - ABIE53_004580 0.20 +0.5 766,390 - ABIE53_004580 0.20 +2.0 766,390 - ABIE53_004580 0.20 +1.0 766,390 - ABIE53_004580 0.20 +2.9 766,390 - ABIE53_004580 0.20 -1.3 766,390 - ABIE53_004580 0.20 -0.0 766,401 + ABIE53_004580 0.22 +1.2 766,401 + ABIE53_004580 0.22 -0.8 766,534 + ABIE53_004580 0.55 +1.4 766,534 + ABIE53_004580 0.55 +1.6 766,535 - ABIE53_004580 0.55 +0.9 766,759 + +1.3 766,760 - +1.0 766,936 + ABIE53_004581 0.43 -0.6 766,936 + ABIE53_004581 0.43 +0.1 767,003 - ABIE53_004581 0.59 -1.7 767,003 - ABIE53_004581 0.59 +0.8 767,003 - ABIE53_004581 0.59 -0.2 767,003 - ABIE53_004581 0.59 +0.7 767,083 + ABIE53_004581 0.79 +0.0 767,179 - -1.1 767,200 + -0.0 767,200 + +0.5 767,200 + -0.5 767,200 + +0.3 767,200 + -2.0 767,200 + +1.2 767,200 + -0.4 767,200 + -0.0 767,200 + +0.6 767,201 - +0.0 767,201 - +1.6 767,201 - +0.7 767,201 - +0.6 767,201 - -1.2 767,201 - +1.0 767,201 - -2.1 767,229 + +1.7 767,229 + +2.6 767,230 - -0.9 767,230 - -0.4 767,230 - +0.3 767,230 - -0.0 767,230 - +1.2 767,267 + -2.1 767,267 + +0.6 767,267 + +0.1 767,267 + -0.3 767,267 + -1.6 767,267 + -1.7 767,267 + +2.9 767,267 + +0.6 767,267 + -1.4 767,267 + +1.6 767,267 + +0.1 767,267 + -2.4 767,267 + +0.6 767,267 + -0.4 767,267 + +0.1 767,267 + -0.1 767,268 - -2.2 767,268 - -1.7 767,268 - -0.5 767,268 - -1.1 767,268 - -0.9 767,268 - -0.1 767,268 - -0.4 767,268 - -1.3 767,268 - -0.8 767,268 - -0.5 767,268 - -1.0 767,268 - -4.5 767,268 - +0.9 767,268 - +0.6 767,268 - -0.7 767,268 - -2.4 767,268 - +1.4 767,268 - -0.1 767,268 - -2.1 767,268 - -1.7 767,268 - +1.0 767,268 - +0.6 767,316 + -0.6 767,316 + +0.3 767,316 + -0.4 767,316 + -0.5 767,316 + +0.5 767,316 + -0.0 767,316 + -0.0 767,316 + +0.6 767,317 - -0.3 767,317 - -1.7 767,317 - -0.7 767,317 - -1.0 767,317 - +0.3 767,317 - -1.3 767,342 + -1.4 767,343 - +0.2 767,343 - -3.7 767,343 - +2.2 767,424 + ABIE53_004582 0.31 +0.6 767,424 + ABIE53_004582 0.31 +0.5 767,424 + ABIE53_004582 0.31 +1.2 767,424 + ABIE53_004582 0.31 -0.4 767,424 + ABIE53_004582 0.31 -0.8 767,425 - ABIE53_004582 0.31 -0.9 767,425 - ABIE53_004582 0.31 -3.2 767,425 - ABIE53_004582 0.31 -2.4 767,425 - ABIE53_004582 0.31 -0.4 767,425 - ABIE53_004582 0.31 -2.3 767,593 - ABIE53_004582 0.79 -1.0 767,659 + -0.7 767,659 + -0.7 767,659 + -2.4 767,659 + -1.0 767,659 + -2.0 767,659 + -0.9 767,659 + -1.6 767,659 + -2.2 767,659 + -2.4 767,659 + +1.2 767,659 + +0.5 767,659 + -0.7 767,659 + +1.2 767,659 + +2.2 767,659 + +2.6 767,659 + -0.2 767,659 + +2.4 767,659 + -0.1 767,659 + +0.6 767,659 + -3.1 767,659 + +2.2 767,659 + +0.6 767,659 + +1.6 767,659 + -0.4 767,660 - +1.0 767,660 - -2.4 767,660 - -0.4 767,660 - -1.6 767,660 - -2.6 767,660 - -1.0 767,660 - -1.3 767,660 - -0.0 767,660 - +0.5 767,660 - +0.3 767,660 - +0.6 767,660 - -0.0 767,660 - +2.6 767,660 - -1.7 767,661 + +0.2 767,661 + +0.4 767,661 + +3.4 767,661 + -0.3 767,661 + -0.1 767,661 + -0.6 767,661 + -0.6 767,661 + +2.2 767,661 + -1.4 767,661 + +1.3 767,661 + +1.0 767,661 + -1.2 767,662 - -0.6 767,662 - -0.4 767,662 - +1.6 767,662 - -2.2 767,662 - -0.7 767,662 - +1.7 767,662 - +1.2 767,662 - -0.1 767,662 - -2.1 767,662 - +0.6 767,662 - -0.4 767,662 - +0.2 767,662 - -2.1 767,662 - +0.1 767,662 - -1.4 767,662 - +3.2 767,714 + +0.8 767,714 + -0.4 767,714 + +2.3 767,714 + -1.1 767,714 + +1.3 767,715 - -1.1 767,715 - -1.2 767,715 - -0.7 767,715 - -1.1 767,715 - +0.6
Or see this region's nucleotide sequence