Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04397 and SMc04398 overlap by 7 nucleotides SMc04398 and SMc04399 overlap by 8 nucleotides SMc04399 and SMc04400 overlap by 1 nucleotides SMc04400 and SMc04401 overlap by 4 nucleotides
SMc04397: SMc04397 - L-sorbosone dehydrogenase, NADP dependent protein, at 3,601,190 to 3,602,704
SMc04397
SMc04398: SMc04398 - enoyl-CoA hydratase, at 3,602,698 to 3,603,477
SMc04398
SMc04399: SMc04399 - acyl-COA transferase, at 3,603,470 to 3,605,092
SMc04399
SMc04400: SMc04400 - oxidoreductase, at 3,605,092 to 3,606,093
SMc04400
SMc04401: SMc04401 - transcriptional regulator, at 3,606,090 to 3,607,133
SMc04401
Position (kb) 3603
3604
3605
3606 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3602.553 kb on + strand at 3603.246 kb on - strand, within SMc04398 at 3603.610 kb on + strand at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.696 kb on + strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3603.697 kb on - strand, within SMc04399 at 3604.305 kb on + strand, within SMc04399 at 3604.306 kb on - strand, within SMc04399 at 3604.351 kb on - strand, within SMc04399 at 3604.482 kb on + strand, within SMc04399 at 3604.482 kb on + strand, within SMc04399 at 3604.500 kb on + strand, within SMc04399 at 3604.501 kb on - strand, within SMc04399 at 3604.501 kb on - strand, within SMc04399 at 3604.501 kb on - strand, within SMc04399 at 3604.501 kb on - strand, within SMc04399 at 3604.501 kb on - strand, within SMc04399 at 3604.572 kb on + strand, within SMc04399 at 3604.754 kb on - strand, within SMc04399 at 3604.754 kb on - strand, within SMc04399 at 3604.758 kb on + strand, within SMc04399 at 3604.830 kb on + strand, within SMc04399 at 3604.830 kb on + strand, within SMc04399 at 3604.831 kb on - strand, within SMc04399 at 3604.831 kb on - strand, within SMc04399 at 3604.875 kb on + strand, within SMc04399 at 3604.875 kb on + strand, within SMc04399 at 3604.875 kb on + strand, within SMc04399 at 3604.876 kb on - strand, within SMc04399 at 3604.876 kb on - strand, within SMc04399 at 3604.876 kb on - strand, within SMc04399 at 3605.072 kb on - strand at 3605.072 kb on - strand at 3605.633 kb on + strand, within SMc04400 at 3605.634 kb on - strand, within SMc04400 at 3605.634 kb on - strand, within SMc04400 at 3605.891 kb on + strand, within SMc04400 at 3605.892 kb on - strand, within SMc04400 at 3605.892 kb on - strand at 3605.892 kb on - strand, within SMc04400 at 3605.892 kb on - strand, within SMc04400
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 3,602,553 + -0.4 3,603,246 - SMc04398 0.70 -1.0 3,603,610 + -0.6 3,603,696 + SMc04399 0.14 +0.0 3,603,696 + SMc04399 0.14 -0.1 3,603,696 + SMc04399 0.14 -0.8 3,603,696 + SMc04399 0.14 -0.2 3,603,696 + SMc04399 0.14 +0.2 3,603,697 - SMc04399 0.14 +0.4 3,603,697 - SMc04399 0.14 +0.0 3,603,697 - SMc04399 0.14 +0.2 3,603,697 - SMc04399 0.14 +0.6 3,603,697 - SMc04399 0.14 -0.2 3,603,697 - SMc04399 0.14 +0.8 3,603,697 - SMc04399 0.14 -0.4 3,604,305 + SMc04399 0.51 +0.1 3,604,306 - SMc04399 0.52 +1.3 3,604,351 - SMc04399 0.54 +0.1 3,604,482 + SMc04399 0.62 +0.1 3,604,482 + SMc04399 0.62 +0.9 3,604,500 + SMc04399 0.63 -0.1 3,604,501 - SMc04399 0.64 +0.0 3,604,501 - SMc04399 0.64 +0.7 3,604,501 - SMc04399 0.64 -0.1 3,604,501 - SMc04399 0.64 -0.1 3,604,501 - SMc04399 0.64 -2.9 3,604,572 + SMc04399 0.68 -0.8 3,604,754 - SMc04399 0.79 +0.1 3,604,754 - SMc04399 0.79 +0.3 3,604,758 + SMc04399 0.79 +0.5 3,604,830 + SMc04399 0.84 +0.0 3,604,830 + SMc04399 0.84 +0.3 3,604,831 - SMc04399 0.84 -1.2 3,604,831 - SMc04399 0.84 +0.5 3,604,875 + SMc04399 0.87 -0.3 3,604,875 + SMc04399 0.87 +0.4 3,604,875 + SMc04399 0.87 -0.4 3,604,876 - SMc04399 0.87 -0.1 3,604,876 - SMc04399 0.87 -0.1 3,604,876 - SMc04399 0.87 -0.2 3,605,072 - +0.7 3,605,072 - +0.4 3,605,633 + SMc04400 0.54 +0.2 3,605,634 - SMc04400 0.54 +0.2 3,605,634 - SMc04400 0.54 -0.0 3,605,891 + SMc04400 0.80 +0.3 3,605,892 - SMc04400 0.80 -0.3 3,605,892 - +1.6 3,605,892 - SMc04400 0.80 +0.1 3,605,892 - SMc04400 0.80 +0.9
Or see this region's nucleotide sequence