Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04125 and SMc04124 are separated by 3 nucleotides SMc04124 and SMc04123 overlap by 4 nucleotides SMc04123 and SMc04122 are separated by 0 nucleotides
SMc04125: SMc04125 - ABC transporter permease, at 150,477 to 151,448
SMc04125
SMc04124: SMc04124 - cytidine deaminase, at 151,452 to 151,910
SMc04124
SMc04123: SMc04123 - purine nucleoside phosphorylase, at 151,907 to 152,704
SMc04123
SMc04122: SMc04122 - thymidine phosphorylase, at 152,705 to 154,027
SMc04122
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 150.924 kb on + strand, within SMc04125 at 150.925 kb on - strand, within SMc04125 at 150.960 kb on + strand, within SMc04125 at 150.960 kb on + strand, within SMc04125 at 150.961 kb on - strand, within SMc04125 at 151.003 kb on - strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.198 kb on - strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.245 kb on - strand, within SMc04125 at 151.362 kb on - strand at 151.362 kb on - strand at 151.426 kb on + strand at 151.432 kb on - strand at 151.490 kb on + strand at 151.490 kb on + strand at 151.490 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.497 kb on - strand at 151.497 kb on - strand at 151.497 kb on - strand at 151.500 kb on + strand, within SMc04124 at 151.501 kb on - strand, within SMc04124 at 151.501 kb on - strand, within SMc04124 at 151.502 kb on + strand, within SMc04124 at 151.626 kb on + strand, within SMc04124 at 151.626 kb on + strand at 151.626 kb on + strand, within SMc04124 at 151.627 kb on - strand, within SMc04124 at 151.627 kb on - strand, within SMc04124 at 151.627 kb on - strand, within SMc04124 at 151.697 kb on + strand, within SMc04124 at 151.698 kb on - strand, within SMc04124 at 151.825 kb on - strand, within SMc04124 at 152.030 kb on + strand, within SMc04123 at 152.031 kb on - strand, within SMc04123 at 152.141 kb on + strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.361 kb on - strand, within SMc04123 at 152.361 kb on - strand, within SMc04123 at 152.432 kb on + strand, within SMc04123 at 152.432 kb on + strand, within SMc04123 at 152.433 kb on - strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 153.204 kb on - strand, within SMc04122 at 153.204 kb on - strand, within SMc04122 at 153.289 kb on - strand, within SMc04122 at 153.486 kb on - strand, within SMc04122 at 153.486 kb on - strand, within SMc04122 at 153.566 kb on - strand, within SMc04122 at 153.698 kb on + strand, within SMc04122 at 153.698 kb on + strand, within SMc04122 at 153.698 kb on + strand, within SMc04122
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 150,924 + SMc04125 0.46 +0.1 150,925 - SMc04125 0.46 -0.3 150,960 + SMc04125 0.50 -0.6 150,960 + SMc04125 0.50 -0.3 150,961 - SMc04125 0.50 +0.1 151,003 - SMc04125 0.54 -0.5 151,197 + SMc04125 0.74 -0.3 151,197 + SMc04125 0.74 -0.8 151,197 + SMc04125 0.74 -0.1 151,198 - SMc04125 0.74 -0.9 151,244 + SMc04125 0.79 -0.4 151,244 + SMc04125 0.79 -0.6 151,244 + SMc04125 0.79 -1.0 151,245 - SMc04125 0.79 -1.3 151,362 - -0.9 151,362 - +0.2 151,426 + +0.5 151,432 - +0.7 151,490 + +0.0 151,490 + +0.0 151,490 + -0.3 151,496 + +1.3 151,496 + +0.3 151,496 + -0.1 151,496 + -0.3 151,496 + +0.8 151,496 + +0.7 151,496 + +0.7 151,496 + -0.3 151,496 + -0.1 151,497 - -0.5 151,497 - -1.3 151,497 - +0.0 151,500 + SMc04124 0.10 +1.2 151,501 - SMc04124 0.11 +1.7 151,501 - SMc04124 0.11 +0.1 151,502 + SMc04124 0.11 +0.2 151,626 + SMc04124 0.38 -1.2 151,626 + -1.9 151,626 + SMc04124 0.38 +1.1 151,627 - SMc04124 0.38 -1.7 151,627 - SMc04124 0.38 -0.6 151,627 - SMc04124 0.38 -0.7 151,697 + SMc04124 0.53 -0.6 151,698 - SMc04124 0.54 -2.3 151,825 - SMc04124 0.81 -0.1 152,030 + SMc04123 0.15 -0.8 152,031 - SMc04123 0.16 -1.4 152,141 + SMc04123 0.29 -0.0 152,145 - SMc04123 0.30 -2.2 152,145 - SMc04123 0.30 +0.1 152,145 - SMc04123 0.30 +0.2 152,145 - SMc04123 0.30 +1.4 152,361 - SMc04123 0.57 +0.9 152,361 - SMc04123 0.57 -0.1 152,432 + SMc04123 0.66 -1.2 152,432 + SMc04123 0.66 -1.2 152,433 - SMc04123 0.66 +3.3 152,434 + SMc04123 0.66 -0.3 152,434 + SMc04123 0.66 -0.1 152,434 + SMc04123 0.66 +0.6 152,434 + SMc04123 0.66 -0.4 152,435 - SMc04123 0.66 -0.5 152,435 - SMc04123 0.66 -0.1 152,435 - SMc04123 0.66 -0.2 152,435 - SMc04123 0.66 -0.4 153,204 - SMc04122 0.38 +0.5 153,204 - SMc04122 0.38 -1.1 153,289 - SMc04122 0.44 +0.4 153,486 - SMc04122 0.59 -1.8 153,486 - SMc04122 0.59 -0.2 153,566 - SMc04122 0.65 -0.2 153,698 + SMc04122 0.75 -0.2 153,698 + SMc04122 0.75 -0.4 153,698 + SMc04122 0.75 -0.3
Or see this region's nucleotide sequence