Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04124 and SMc04123 overlap by 4 nucleotides SMc04123 and SMc04122 are separated by 0 nucleotides SMc04122 and SMc04121 are separated by 103 nucleotides SMc04121 and SMc04120 are separated by 110 nucleotides
SMc04124: SMc04124 - cytidine deaminase, at 151,452 to 151,910
SMc04124
SMc04123: SMc04123 - purine nucleoside phosphorylase, at 151,907 to 152,704
SMc04123
SMc04122: SMc04122 - thymidine phosphorylase, at 152,705 to 154,027
SMc04122
SMc04121: SMc04121 - uracil phosphoribosyltransferase, at 154,131 to 154,760
SMc04121
SMc04120: SMc04120 - adenosine deaminase, at 154,871 to 155,845
SMc04120
Position (kb) 152
153
154
155 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 151.825 kb on - strand, within SMc04124 at 152.030 kb on + strand, within SMc04123 at 152.031 kb on - strand, within SMc04123 at 152.141 kb on + strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.361 kb on - strand, within SMc04123 at 152.361 kb on - strand, within SMc04123 at 152.432 kb on + strand, within SMc04123 at 152.432 kb on + strand, within SMc04123 at 152.433 kb on - strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 153.204 kb on - strand, within SMc04122 at 153.204 kb on - strand, within SMc04122 at 153.289 kb on - strand, within SMc04122 at 153.486 kb on - strand, within SMc04122 at 153.486 kb on - strand, within SMc04122 at 153.566 kb on - strand, within SMc04122 at 153.698 kb on + strand, within SMc04122 at 153.698 kb on + strand, within SMc04122 at 153.698 kb on + strand, within SMc04122 at 153.749 kb on + strand, within SMc04122 at 153.962 kb on + strand at 153.963 kb on - strand at 154.030 kb on - strand at 154.067 kb on + strand at 154.132 kb on + strand at 154.133 kb on - strand at 154.144 kb on + strand at 154.144 kb on + strand at 154.145 kb on - strand at 154.145 kb on - strand at 154.182 kb on - strand at 154.420 kb on + strand, within SMc04121 at 154.420 kb on + strand, within SMc04121 at 154.873 kb on - strand at 154.880 kb on + strand at 154.880 kb on + strand at 154.881 kb on - strand at 154.999 kb on - strand, within SMc04120
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 151,825 - SMc04124 0.81 -0.1 152,030 + SMc04123 0.15 -0.8 152,031 - SMc04123 0.16 -1.4 152,141 + SMc04123 0.29 -0.0 152,145 - SMc04123 0.30 -2.2 152,145 - SMc04123 0.30 +0.1 152,145 - SMc04123 0.30 +0.2 152,145 - SMc04123 0.30 +1.4 152,361 - SMc04123 0.57 +0.9 152,361 - SMc04123 0.57 -0.1 152,432 + SMc04123 0.66 -1.2 152,432 + SMc04123 0.66 -1.2 152,433 - SMc04123 0.66 +3.3 152,434 + SMc04123 0.66 -0.3 152,434 + SMc04123 0.66 -0.1 152,434 + SMc04123 0.66 +0.6 152,434 + SMc04123 0.66 -0.4 152,435 - SMc04123 0.66 -0.5 152,435 - SMc04123 0.66 -0.1 152,435 - SMc04123 0.66 -0.2 152,435 - SMc04123 0.66 -0.4 153,204 - SMc04122 0.38 +0.5 153,204 - SMc04122 0.38 -1.1 153,289 - SMc04122 0.44 +0.4 153,486 - SMc04122 0.59 -1.8 153,486 - SMc04122 0.59 -0.2 153,566 - SMc04122 0.65 -0.2 153,698 + SMc04122 0.75 -0.2 153,698 + SMc04122 0.75 -0.4 153,698 + SMc04122 0.75 -0.3 153,749 + SMc04122 0.79 +0.9 153,962 + +0.3 153,963 - +0.2 154,030 - -1.7 154,067 + +0.2 154,132 + -1.1 154,133 - -1.5 154,144 + -2.3 154,144 + -1.0 154,145 - -1.4 154,145 - -0.6 154,182 - +0.5 154,420 + SMc04121 0.46 -0.7 154,420 + SMc04121 0.46 -0.3 154,873 - +0.1 154,880 + -0.5 154,880 + -0.3 154,881 - +0.5 154,999 - SMc04120 0.13 +1.0
Or see this region's nucleotide sequence