Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03068 and SMc03069 are separated by 91 nucleotides SMc03069 and SMc03070 are separated by 8 nucleotides
SMc03068: SMc03068 - phosphogluconate dehydratase, at 766,634 to 768,454
SMc03068
SMc03069: SMc03069 - 6-phosphogluconolactonase, at 768,546 to 769,244
SMc03069
SMc03070: SMc03070 - glucose-6-phosphate 1-dehydrogenase, at 769,253 to 770,728
SMc03070
Position (kb) 768
769
770 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 767.778 kb on + strand, within SMc03068 at 767.785 kb on + strand, within SMc03068 at 767.785 kb on + strand, within SMc03068 at 767.786 kb on - strand, within SMc03068 at 767.805 kb on + strand, within SMc03068 at 767.806 kb on - strand, within SMc03068 at 768.189 kb on + strand, within SMc03068 at 768.189 kb on + strand, within SMc03068 at 768.228 kb on + strand, within SMc03068 at 768.228 kb on + strand, within SMc03068 at 768.229 kb on - strand, within SMc03068 at 768.229 kb on - strand, within SMc03068 at 768.382 kb on - strand at 768.424 kb on + strand at 768.435 kb on - strand at 768.478 kb on + strand at 768.559 kb on + strand at 768.559 kb on + strand at 768.560 kb on - strand at 768.560 kb on - strand at 768.560 kb on - strand at 768.560 kb on - strand at 768.561 kb on + strand at 768.561 kb on + strand at 768.561 kb on + strand at 768.562 kb on - strand at 768.685 kb on + strand, within SMc03069 at 768.827 kb on + strand, within SMc03069 at 768.827 kb on + strand, within SMc03069 at 769.254 kb on + strand at 769.254 kb on + strand at 769.330 kb on + strand at 769.331 kb on - strand at 769.467 kb on + strand, within SMc03070 at 769.722 kb on + strand, within SMc03070 at 769.722 kb on + strand, within SMc03070 at 769.818 kb on + strand, within SMc03070 at 770.002 kb on + strand, within SMc03070 at 770.046 kb on + strand, within SMc03070 at 770.130 kb on + strand, within SMc03070 at 770.131 kb on - strand, within SMc03070 at 770.188 kb on - strand, within SMc03070
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 767,778 + SMc03068 0.63 -0.2 767,785 + SMc03068 0.63 +0.8 767,785 + SMc03068 0.63 +1.0 767,786 - SMc03068 0.63 +0.1 767,805 + SMc03068 0.64 -0.1 767,806 - SMc03068 0.64 +0.0 768,189 + SMc03068 0.85 -0.6 768,189 + SMc03068 0.85 +0.2 768,228 + SMc03068 0.88 +0.0 768,228 + SMc03068 0.88 +0.2 768,229 - SMc03068 0.88 +0.3 768,229 - SMc03068 0.88 -0.1 768,382 - -0.2 768,424 + -0.9 768,435 - -0.7 768,478 + -1.5 768,559 + -0.3 768,559 + -1.3 768,560 - -1.5 768,560 - -1.3 768,560 - -2.9 768,560 - -2.0 768,561 + -2.6 768,561 + -4.0 768,561 + -2.0 768,562 - -1.1 768,685 + SMc03069 0.20 -2.5 768,827 + SMc03069 0.40 +0.1 768,827 + SMc03069 0.40 -1.3 769,254 + -0.8 769,254 + -1.8 769,330 + -1.5 769,331 - -0.5 769,467 + SMc03070 0.14 -0.7 769,722 + SMc03070 0.32 -2.5 769,722 + SMc03070 0.32 +0.9 769,818 + SMc03070 0.38 -2.0 770,002 + SMc03070 0.51 +0.5 770,046 + SMc03070 0.54 +1.5 770,130 + SMc03070 0.59 +0.5 770,131 - SMc03070 0.59 -0.3 770,188 - SMc03070 0.63 -1.0
Or see this region's nucleotide sequence