Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02858 and SMc02859 are separated by 172 nucleotides SMc02859 and SMc02860 are separated by 4 nucleotides SMc02860 and SMc02861 are separated by 113 nucleotides
SMc02858: SMc02858 - chaperone protein DnaJ, at 211,964 to 213,103
SMc02858
SMc02859: SMc02859 - hypothetical protein, at 213,276 to 214,160
SMc02859
SMc02860: SMc02860 - hypothetical protein, at 214,165 to 214,800
SMc02860
SMc02861: SMc02861 - phosphate transporter, at 214,914 to 215,918
SMc02861
Position (kb) 213
214
215 Strain fitness (log2 ratio) -1
0
1 at 212.771 kb on + strand, within SMc02858 at 213.470 kb on - strand, within SMc02859 at 213.470 kb on - strand, within SMc02859 at 213.633 kb on + strand, within SMc02859 at 213.805 kb on + strand, within SMc02859 at 213.971 kb on + strand, within SMc02859 at 214.066 kb on + strand, within SMc02859 at 214.384 kb on - strand, within SMc02860 at 214.384 kb on - strand, within SMc02860 at 214.616 kb on - strand, within SMc02860 at 214.742 kb on + strand at 214.742 kb on + strand at 214.743 kb on - strand at 214.816 kb on + strand at 214.817 kb on - strand at 214.867 kb on + strand at 214.867 kb on + strand at 214.868 kb on - strand at 214.868 kb on - strand at 214.869 kb on + strand at 214.870 kb on - strand at 214.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 212,771 + SMc02858 0.71 -0.8 213,470 - SMc02859 0.22 +1.1 213,470 - SMc02859 0.22 -0.0 213,633 + SMc02859 0.40 -0.6 213,805 + SMc02859 0.60 +0.4 213,971 + SMc02859 0.79 +1.5 214,066 + SMc02859 0.89 +1.0 214,384 - SMc02860 0.34 +0.4 214,384 - SMc02860 0.34 -1.0 214,616 - SMc02860 0.71 +0.4 214,742 + +0.5 214,742 + -1.1 214,743 - -1.0 214,816 + -0.4 214,817 - +0.3 214,867 + -0.4 214,867 + -0.3 214,868 - +0.2 214,868 - -0.3 214,869 + -0.1 214,870 - -0.0 214,940 - -0.2
Or see this region's nucleotide sequence